A pilot biochemical reactor (BCR) for Se treatment has been operating at a coal mine since 2008. The BCR is an anaerobic reactor comprised of organic and inorganic substrate including woodchips, straw, and limestone. The BCR is considered a passive treatment because it does not require continuous chemical inputs or electricity. Selenium is removed in the BCR by biological reduction of oxidized Se species (i.e., selenite, selenate) to insoluble elemental Se. The pilot influent water contained an average of 195 ug/L of Se.Average influent dissolved oxygen (DO) and nitrate (as N) concentrations were 9.2 mg/L and 36 mg/L, respectively. The maximum removal rate for total selenium was 93%. The average Se and NO 3 removal rates were 17 mg/d/m 3 and 5 g/d/m 3 , respectively. The decomposition of organic matter in the BCR provides simple carbon molecules that can serve as an electron donor in the anaerobic reduction; however this process is not constant over time. In the pilot test, effluent nutrient concentrations decreased with time but remained sufficiently high to support Se reduction after three years. The Se removal rate did decrease over time indicating that decreasing nutrients in the BCR may be responsible for the decreasing Se removal rates.