DNA transfections are widely performed in research laboratories and in vivo gene delivery holds the promise for curing many diseases. The synthetic carriers or vectors for DNA are typically cationic lipids. However, in biology, the recognition of nucleic acids by proteins involves both electrostatic and stacking contributions. As such we have prepared a series of new lipophilic peptide vectors that possess lysine and tryptophan amino acids for evaluation. These lipophilic peptides show minimal cytotoxicity and enhanced in vitro gene transfection activity.The complexation of cationic amphiphiles with DNA or RNA and the resulting supramolecular structures are of interest for the delivery of nucleic acids to cells. As such, a means to correct a defective gene, introduce a new gene, or knock-down a gene is provided for a specific in vitro or in vivo application (1-7). This complexation between cationic amphiphiles and nucleic acids is governed by electrostatic interactions between the positively charged amphiphiles and the negatively charged phosphate backbone of the nucleic acid and the hydrophobic chainchain packing forces between the individual assembled amphiphiles. In biology, the recognition of nucleic acids by proteins involves more than electrostatic interactions (8-10). Examination of these protein nucleic acid recognition motifs typically reveals structures rich in basic and aromatic amino acids that provide important electrostatic and stacking contributions to binding. With this inspiration in mind, we are designing peptide-based amphiphiles for gene delivery. Herein we describe a series of lipophilic peptides including the synthesis, physiochemical properties, cytotoxicity, and in vitro gene transfection activity.To mimic structural characteristics present in nucleic acid binding proteins, we selected the tripeptide Lys-Trp-Lys, KWK, to be the headgroup for the amphiphile because it possesses cationic charges and an aromatic side chain and is relatively small in size. Moreover, this peptide is known to bind DNA with a binding constant on the order of 10 4 M and is a model peptide used to study protein-nucleic acid interactions, and lysine and tryptophan provide important interactions in a number of structurally characterized DNA binding domains of proteins (11)(12)(13)(14). In addition, lysine-based small molecule amphiphiles and macromolecules (e.g., polylysine) are being explored and used for gene transfection (15)(16)(17)(18)(19)(20)(21)(22)(23)(24). In order to perform a systematic study to identify the key molecular components responsible for transfection © 2008 American Chemical Society * Correspondence should be addressed to M.W.G.; author E-mail: mgrin@bu.edu.
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NIH-PA Author ManuscriptNIH-PA Author Manuscript NIH-PA Author Manuscript activity with these new lipophilic peptides, we prepared a series of amphiphiles where the headgroup (charge, aliphatic content, aromatic content) and fatty acid chain length (C12:0, C14:0, C16:0, and C18:0) were varied. As shown in Figure ...