Bees, the largest (>16,000 species) and most important radiation of pollinating insects, originated in early to mid-Cretaceous, roughly in synchrony with the angiosperms (flowering plants). Understanding the diversification of the bees and the coevolutionary history of bees and angiosperms requires a well supported phylogeny of bees (as well as angiosperms). We reconstructed a robust phylogeny of bees at the family and subfamily levels using a data set of five genes (4,299 nucleotide sites) plus morphology (109 characters). The molecular data set included protein coding (elongation factor-1␣, RNA polymerase II, and LW rhodopsin), as well as ribosomal (28S and 18S) nuclear gene data. Analyses of both the DNA data set and the DNA؉morphology data set by parsimony and Bayesian methods yielded a single well supported family-level tree topology that places Melittidae as a paraphyletic group at the base of the phylogeny of bees. This topology (''Melittidae-LT basal'') is significantly better than a previously proposed alternative topology (''Colletidae basal'') based both on likelihood and Bayesian methods. Our results have important implications for understanding the early diversification, historical biogeography, host-plant evolution, and fossil record of bees. The earliest branches of bee phylogeny include lineages that are predominantly host-plant specialists, suggesting that host-plant specificity is an ancestral trait in bees. Our results suggest an African origin for bees, because the earliest branches of the tree include predominantly African lineages. These results also help explain the predominance of Melittidae, Apidae, and Megachilidae among the earliest fossil bees.bee phylogeny ͉ bee evolution ͉ molecular evolution ͉ molecular systematics ͉ coevolution A ngiosperms (flowering plants), with an estimated 250,000-260,000 species (1), represent the largest and most diverse lineage of vascular plants on earth. To Darwin, the rapid emergence and early diversification of the angiosperms was an ''abominable mystery' ' (ref. 2 and refs. therein). Among the most important traits attributable to the explosive radiation of the angiosperms is animal-mediated pollination (3-7). Insects are by far the most important animal pollinators (Ϸ70% of angiosperm species are insect pollinated; ref. 8) and among insects, bees are the most specialized and important pollinator group. All of the Ͼ16,000 species of bees living today (9) rely virtually exclusively on angiosperm products, including pollen and nectar for adult and larval nutrition (10), floral oils for larval nutrition (11, 12), floral waxes and perfumes that serve as sexual attractants (13), and resins for nest construction (14). Bees are morphologically adapted to collecting, manipulating, carrying, and storing pollen and other plant products (15, 16), and many bee species are specialists on one or a few closely related host plants (10).One step toward resolving Darwin's ''abominable mystery'' is to develop a better understanding of the role that bees played in the ev...