Phylogeny and intraspecific variability of holoparasitic Orobanche (Orobanchaceae) inferred from plastid rbcL sequences

Manen, Jean‐François; Habashi, Christine; Jeanmonod, Daniel; Park, Jeong-Mi; Schneeweiss, Gerald M.

doi:10.1016/j.ympev.2004.06.010

Cited by 53 publications

(45 citation statements)

References 35 publications

Supporting

Mentioning

Contrasting

Unclassified

Order By: Relevance

“…the average amounts of isolated DNA were 250-300 ng and the above counted contaminations were present in negligible amounts. primers the sixteen iSSR primers preselected by hristova et al (16) from primer Set #9 (University of British columbia, nucleic Acid-Protein Service Unit, nAPS Unit, http:// www.michaelsmith.ubc.ca/services/NAPS/ Primer_Sets/) were tested in this study. Because the production of Primer Set #9 was discontinued by UBC -NAPS Unit, the primers were ordered from Metabion International AG, Martinsried, Germany and upon arrival were dissolved in DNase-free water to 100 mmol final concentration.…”

Section: Dna Preparationmentioning

confidence: 99%

See 1 more Smart Citation

Identification of ISSR Markers for Studying the Biodiversity of Bulgarian Representatives of GenusOrobancheSubsectionMinores

Stoyanov

Gevezova

Denev

2012

Biotechnology & Biotechnological Equipment

View full text Add to dashboard Cite

Section: Dna Preparationmentioning

confidence: 99%

“…were grouped in the aggregate O. minor (7,9,12). According to Musselman (17,18) this aggregate consists of only one species, which displays wide morphological variability caused by the host plant and is poorly resolved even by broad-scale molecular phylogenetic analyses (16,23,26).…”

Section: Introductionmentioning

confidence: 99%

Identification of ISSR Markers for Studying the Biodiversity of Bulgarian Representatives of GenusOrobancheSubsectionMinores

Stoyanov

Gevezova

Denev

2012

Biotechnology & Biotechnological Equipment

View full text Add to dashboard Cite

“…The Consortium for the Barcode of Life (CBOL) plant working group recommended the 2-locus combination of ribulose-1,5-bisphosphate carboxylase oxygenase large subunit (rbcL) and maturase K (matK) as the standard plant barcode based on assessments of recoverability, sequence quality and levels of species discrimination (CBOL Plant Working Group, 2009). Recently, several investigators used rbcL and matK sequences for barcoding or species identification (Asahina et al, 2010;Starr et al, 2009) as well as for phylogenetic analysis (Kuo et al, 2011;Manen et al, 2004;Tamura et al, 2004). However, universal barcode markers may not work in all cases (Roy et al, 2010).…”

Section: Introductionmentioning

confidence: 99%

Assessment of DNA Barcoding for the Identification of Chenopodium murale L. (Chenopodiaceae)

Bafeel¹,

Arif²,

Al-Homaidan³

et al. 2012

IJB

View full text Add to dashboard Cite

Chenopodium murale L. (Chenopodiaceae) is an erect annual herbaceous weed. This species is a threat for ecosystems worldwide as this annual-weed affects the growth and development of other plants by reducing the biological nitrogen-fixing ability. We evaluated the barcoding genes of the plastid region of C. murale [rbcL (Ribulose-1,5-bisphosphate carboxylase/oxygenase) and matK (Maturase K)] for the success of PCR amplification, the differential inter-specific divergences and the ability of a single gene or combination of rbcL and matK genes to discriminate C. murale as individual species. Online nucleotide database-search using individually produced sequences of rbcL and matK gene of the plastid region primarily identified the specimen as C. murale with 100% sequence similarity. The single gene matK showed better resolution of the tree compared with the other phylogenetic-trees that were inferred from the single rbcL gene sequence or the combination of sequences of rbcL and matK. We found that single gene sequence of matK had high discrimination efficiency for the identification of the species C.

show abstract

“…A. melampodina revealed 13 specific bands, while A. pseudocotula and A. bornmuelleri showed 10 and 6 specific bands (SM), respectively. These bands may be possible specific markers after verifying that, individuals of each species appear the same description (Roman et al, 2003;Manen et al, 2004). Results of monomorphism and polymorphism of Anthemis using RAPD-analysis might be precise findings for the genetic diversity of genus Anthemis, to specify each species with the appearance of specific markers and definitive bands.…”

Section: Resultsmentioning

confidence: 90%

Detection of genetic diversity among some species of Anthemis L. (Asteraceae) in Saudi Arabia by using RAPD-PCR analysis

Qari¹

2017

Afr. J. Plant Sci.

View full text Add to dashboard Cite

The aim of the present study was to determine the unique molecular markers among, three species of the genus Anthemis and the construction of phylogenetic tree using the random amplified polymorphic DNA-polymerase chain reaction (RAPD-PCR) technique. Genetic diversity was analyzed among 15 populations of three species of Anthemis (Anthemis melampodina, Anthemis, pseudocotula and Anthemis, bornmuelleri), collected from different locations at Saudi Arabia by using RAPD primers. Pairwise genetic distance was calculated based on Nei and Li coefficient. Unweighted pair group method with an average (UPGMA) was used for construction of dendrogram, based on the similarity matrix data. Results showed wide variations among A. bornmuelleri and other two species. A wide close genetic relation was observed between A. melampodina and A. pseudocotula. RAPD-PCR technique was shown to be an accurate tool, in other to ascertain plant relationships among species of genus Anthemis.

show abstract

Phylogeny and intraspecific variability of holoparasitic Orobanche (Orobanchaceae) inferred from plastid rbcL sequences

Cited by 53 publications

References 35 publications

Identification of ISSR Markers for Studying the Biodiversity of Bulgarian Representatives of GenusOrobancheSubsectionMinores

Identification of ISSR Markers for Studying the Biodiversity of Bulgarian Representatives of GenusOrobancheSubsectionMinores

Assessment of DNA Barcoding for the Identification of Chenopodium murale L. (Chenopodiaceae)

Detection of genetic diversity among some species of Anthemis L. (Asteraceae) in Saudi Arabia by using RAPD-PCR analysis

Contact Info

Product

Resources

About