Phylogenomics and mitochondrial genome evolution of the gall-associated doryctine wasp genera (Hymenoptera: Braconidae)

Samacá-Sáenz, Ernesto; Meza-Lázaro, Rubí N.; Branstetter, Michael G.; Zaldívar‐Riverón, Alejandro

doi:10.1080/14772000.2019.1685608

Cited by 9 publications

(10 citation statements)

References 71 publications

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“…These studies showed that mt protein-coding gene organization in Braconidae is not substantially different from the putative ancestral Pancrustacean mt genome or among members of this family. Our results confirm this conservative mt protein-coding gene order, as we only found a novel inversion of the ATP6 and ATP8 genes in one member of Cheloninae and confirmed previously reported translocations in the doryctine S. bruchivora [ 57 ]. A conserved protein-coding gene order is also present in other hymenopteran families [ 7 , 56 ].…”

Section: Discussionsupporting

confidence: 91%

“…In the HAM doryctine clade, which also included Pambolinae, this tRNAs cluster included trn D , trn H and trnK . On the other hand, similar to the results obtained in Samacá-Sáenz et al [ 57 ], in the SA clade this tRNAs cluster was generally composed of trnK and trnD except for S. bruchivora , whose translocation was located between the protein-coding genes NAD4L and ATP8 with a trnK-trnT-trnD order. The trnK - trnD order observed in the Neotropical doryctine clade was similar to the one found here in the cyclostome s.l .…”

Section: Discussionsupporting

confidence: 88%

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Mitochondrial phylogenomics and mitogenome organization in the parasitoid wasp family Braconidae (Hymenoptera: Ichneumonoidea)

et al. 2022

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Background Mitochondrial (mt) nucleotide sequence data has been by far the most common tool employed to investigate evolutionary relationships. While often considered to be more useful for shallow evolutionary scales, mt genomes have been increasingly shown also to contain valuable phylogenetic information about deep relationships. Further, mt genome organization provides another important source of phylogenetic information and gene reorganizations which are known to be relatively frequent within the insect order Hymenoptera. Here we used a dense taxon sampling comprising 148 mt genomes (132 newly generated) collectively representing members of most of the currently recognised subfamilies of the parasitoid wasp family Braconidae, which is one of the largest radiations of hymenopterans. We employed this data to investigate the evolutionary relationships within the family and to assess the phylogenetic informativeness of previously known and newly discovered mt gene rearrangements. Results Most subfamilial relationships and their composition obtained were similar to those recovered in a previous phylogenomic study, such as the restoration of Trachypetinae and the recognition of Apozyginae and Proteropinae as valid braconid subfamilies. We confirmed and detected phylogenetic signal in previously known as well as novel mt gene rearrangements, including mt rearrangements within the cyclostome subfamilies Doryctinae and Rogadinae. Conclusions Our results showed that both the mt genome DNA sequence data and gene organization contain valuable phylogenetic signal to elucidate the evolution within Braconidae at different taxonomic levels. This study serves as a basis for further investigation of mt gene rearrangements at different taxonomic scales within the family.

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Section: Discussionsupporting

confidence: 91%

Section: Discussionsupporting

confidence: 88%

Mitochondrial phylogenomics and mitogenome organization in the parasitoid wasp family Braconidae (Hymenoptera: Ichneumonoidea)

et al. 2022

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“…70% completeness matrix, 196 loci). This contrasts with recent phylogenomic studies with other hymenopteran taxa, which shared high amounts of UCE loci in more complete matrices (≥90% completeness matrices) using recently collected samples (Blaimer et al ., 2015; Samacá‐Sáenz et al ., 2019). However, it is important to highlight that the differences in the amount of missing data in our datasets did not have a strong negative effect in the phylogenetic reconstruction, since their recovered trees were very similar, only having differences in three poorly supported relationships.…”

Section: Discussionmentioning

confidence: 99%

Phylogenomics of the lepidopteran endoparasitoid wasp subfamily Rogadinae (Hymenoptera: Braconidae) and related subfamilies

Jasso-Martínez

Quicke

Belokobylskij

et al. 2020

Systematic Entomology

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Rogadinae are a cosmopolitan, species‐rich braconid wasp subfamily whose species are endoparasitoids that attack larvae of a number of lepidopteran families. Members of this subfamily are characterized by pupating within the mummified host larval skin. The subfamily contains six tribes whose relationships have only been partially clarified: Aleiodini, Betylobraconini, Clinocentrini, Rogadini, Stiropiini and Yeliconini. The limits and composition of the closely related subfamilies to the Rogadinae, Hormiinae and Lysiterminae, also remain unclear. Here, we generated ultraconserved element data to reconstruct an almost fully resolved phylogeny for the members of Rogadinae and related subfamilies. Based on our best estimate of phylogeny, we confirm the monophyly of Rogadinae including Betylobraconini, synonymize Xenolobus Fahringer and Bequartia Cameron within the species‐rich genus Aleiodes Wesmael (syn.n.) based on DNA, and synonymize Promesocentrus van Achterberg with Pilichremylus Belokobylskij (syn.n.) based on morphology. We also consistently recovered Hormiinae and Lysiterminae as not reciprocally monophyletic, and thus propose to unite their members under Hormiinae. The ancestral host preference for Rogadinae was probably attacking concealed lepidopteran larvae, with the occurrence of at least two main subsequent transitions to attack both concealed and exposed hosts, one within Rogadini and a second within Aleiodini. We highlight the importance of natural history collections as a source for conducting genomic‐based studies using techniques that allow to obtain a substantial amount of data from considerably old preserved insect specimens.

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“…The COI sequences of the doryctines Rhaconotus Ruthe sp., Lissopsius Marsh sp. and Stenocorse bruchivora (Crawford) were obtained from the assembled mitogenomes by Samacá-Sáenz et al (2019). The obtained assemblies were further verified by blast.…”

Section: Molecular Datamentioning

confidence: 99%

A molecular phylogeny of the parasitoid wasp subfamily Rogadinae (Ichneumonoidea: Braconidae) with descriptions of three new genera

Quicke

Fagan‐Jeffries

Jasso-Martínez

et al. 2021

Systematic Entomology

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A molecular phylogeny of the subfamily Rogadinae is presented for 469 species in 52 genera representing all tribes and subtribes. The data comprise cytochrome c oxidase I sequences (DNA barcodes), together with a broad representation of 28S rDNA D2‐D3 expansion region, EF1‐α gene and 16S rDNA fragments. To test monophyly, most genera were represented by multiple species. The analysis of the complete dataset recovered a monophyletic Rogadinae with low support. All six tribes were recovered as monophyletic with the following relationships: (Rogadini, (Stiropiini, (Clinocentrini, (Betylobraconini, [Yeliconini, Aleiodini])))). Three new genera are recognized: Afrorogas Quicke gen.n. (type species Afrorogas copelandi Quicke sp.n.) for a mainland Afrotropical species; Amanirogas Quicke gen.n. (type species Amanirogas isolatus Quicke sp.n.), previously treated as a Rogas species from Tanzania; and Papuarogas Quicke gen.n. (type species P. dameni Quicke sp.n.), for species from Papua New Guinea. Iporhogas Granger is synonymized with Troporhogas Cameron. The African genera Myoporhogas Brues, Scoporogas van Achterberg and the endemic New Zealand genus Rhinoprotoma van Achterberg are synonymized with Aleiodes. A formal diagnosis of the Aleiodini Muesebeck is provided for the first time. This published work has been registered on ZooBank, http://zoobank.org/urn:lsid:urn:lsid:zoobank.org:pub:F24DC64C-54B7-45DA-AB8E-52DC3E34545C

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Phylogenomics and mitochondrial genome evolution of the gall-associated doryctine wasp genera (Hymenoptera: Braconidae)

Cited by 9 publications

References 71 publications

Mitochondrial phylogenomics and mitogenome organization in the parasitoid wasp family Braconidae (Hymenoptera: Ichneumonoidea)

Mitochondrial phylogenomics and mitogenome organization in the parasitoid wasp family Braconidae (Hymenoptera: Ichneumonoidea)

Phylogenomics of the lepidopteran endoparasitoid wasp subfamily Rogadinae (Hymenoptera: Braconidae) and related subfamilies

A molecular phylogeny of the parasitoid wasp subfamily Rogadinae (Ichneumonoidea: Braconidae) with descriptions of three new genera

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