Phylogenetic Relationships of Korean Viola (Violaceae) Based on matK and atpB-rbcL Sequence Data of Chloroplast DNA

Yoo, Ki Oug; Jang, Sung Kyu; Lee, Woo Tchul

doi:10.11110/kjpt.2007.37.1.001

Cited by 6 publications

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“…Several phylogenetic studies were carried out to reconstruct infrageneric and interspecific relationships of Korean Viola , including those based on randomly amplified polymorphic DNA (RAPD), inter simple sequence repeat (ISSR), PCR–restriction fragment length polymorphism (RFLP) (Yoo et al, 2004), ITS (Yoo et al, 2005; Whang, 2006), trnL‐trnF (Yoo & Kim, 2006), morphology, palynology, anatomy, ultrastructure and ITS (Jang et al, 2006), and matK and atpB‐rbcL (Yoo et al, 2007).…”

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confidence: 99%

“…Hypocarpae and Trigonocarpae of sect. Nomimium in the matK and atpB‐rbcL data (Yoo et al, 2007). Two subsections Hypocarpae and Trigonocarpae of sect.…”

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confidence: 99%

“…Nomimium were monophyletic and basally branching within the parsimonious tree in the ITS (Yoo et al, 2005) and trnL‐trnF data (Yoo & Kim, 2006), however, it was branched first with sect. Chamaemalanium and Dischidium in the matK and atpB‐rbcL data (Yoo et al, 2007). Subsections Bilobatae and Vaginatae of sect.…”

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confidence: 99%

“…Subsections Bilobatae and Vaginatae of sect. Nomimium were monophyletic in the chloroplast DNA (cpDNA) data (Yoo & Kim, 2006; Yoo et al, 2007), but unresolved within the ITS data (Yoo et al, 2005). Viola albida complex was monophyletic in the RAPD, ISSR, and PCR‐RFLP (Yoo et al, 2004) and ITS data (Yoo et al, 2005).…”

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confidence: 99%

“…Viola albida complex was monophyletic in the RAPD, ISSR, and PCR‐RFLP (Yoo et al, 2004) and ITS data (Yoo et al, 2005). However, the cpDNA data (Yoo & Kim, 2006; Yoo et al, 2007), morphology, palynology, anatomy, ultrastructure and ITS (Jang et al, 2006), and ITS (Whang, 2006) data were paraphyletic or unresolved within the clade.…”

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confidence: 99%

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Infrageneric relationships of Korean Viola based on eight chloroplast markers

Yoo

Jang

2010

Journal of Systematics and Evolution

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Phylogeny and infrageneric relationships were reconstructed for Korean Viola (Violaceae) using eight chloroplast sequences: the atpB-rbcL intergenic spacer, the atpF-H intergenic spacer, the matK gene, the psbA-trnH intergenic spacer, the psbK-I intergenic spacer, the rpl16 intron, the rpoC1 exon 2, and the trnL-trnF regions. The combined analyses of the eight chloroplast regions suggest that sections Dischidium and Chamaemelanium are monophyletic, whereas section Nomimium is paraphyletic; sections Dischidium and Chamaemelanium form a clade with subsections Hypocarpae and Trigonocarpae of section Nomimium, but unresolved within the clade; two subsections (subsects. Bilobatae and Vaginatae) of section Nomimium form a clade and are placed between the stem and stemless species group; and subsection Patellares of section Nomimium is monophyletic, and Viola dissecta is diverged first in the clade with high support (BS = 100, PP = 100). Our present results support the subsectional grouping based on morphological characteristics, although discordance remained at the series level.

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confidence: 99%

“…Hypocarpae and Trigonocarpae of sect. Nomimium in the matK and atpB‐rbcL data (Yoo et al, 2007). Two subsections Hypocarpae and Trigonocarpae of sect.…”

mentioning

confidence: 99%

mentioning

confidence: 99%

mentioning

confidence: 99%

mentioning

confidence: 99%

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Infrageneric relationships of Korean Viola based on eight chloroplast markers

Yoo

Jang

2010

Journal of Systematics and Evolution

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Isolation and Characterization of Microsatellite Markers for Viola websteri (Violaceae) and Cross-Species Amplification within the Genus Viola

2016

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A complete chloroplast genome sequence of Viola albida Palibin 1899 (Violaceae), a member of VIOLA ALBIDA complex

Moon

Kim

2023

Mitochondrial DNA Part B

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The VIOLA ALBIDA complex is a complicated group with taxonomic problems having continuous leaf variations and composed of taxa related to the following names: Viola albida , V. albida var. takahashii , and V. chaerophylloides. As a first step to understanding the genomic nature of this complex, this study identified the whole chloroplast genome of V. albida . The genome is 157,692 bp in length (36.3% of GC content) and contains four subregions: a large single copy region of 86,220 bp, a small single copy region of 17,248 bp, and a pair of inverted regions of 27,112 bp each. An annotation of the gene identifies 111 unique genes, including 77 protein-coding genes, four rRNA genes, and 30 tRNA genes. The phylogenetic analysis of this genome with selected cp genomes from Viola identifies the close relationship between V. albida and V. ulleungdoensis. It is noteworthy that V. chaerophylloides , traditionally recognized as a member of the VIOLA ALBIDA complex, is genetically distant from V. albida and forms a sister group of all other members of the subsection Patellares . Our genome report is expected to serve as a basis for understanding the identity of the VIOLA ALBIDA complex.

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Phylogenetic Relationships of Korean Viola (Violaceae) Based on matK and atpB-rbcL Sequence Data of Chloroplast DNA

Cited by 6 publications

References 0 publications

Infrageneric relationships of Korean Viola based on eight chloroplast markers

Infrageneric relationships of Korean Viola based on eight chloroplast markers

Isolation and Characterization of Microsatellite Markers for Viola websteri (Violaceae) and Cross-Species Amplification within the Genus Viola

A complete chloroplast genome sequence of Viola albida Palibin 1899 (Violaceae), a member of VIOLA ALBIDA complex

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