Phylogenetic Analysis Within Tephritidae of Diptera Based on the Concatenated 13 Mitochondrial Protein Coding Genes of mt Genomes

Li, Qingqing; Li, Diyan; Li, Mo-Mo; Ye, Hui; Shi, Wei; Zhang, Long; Yanqing, Duan

doi:10.3923/ajava.2013.542.547

Cited by 3 publications

(3 citation statements)

References 10 publications

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“…The high-level phylogenetic analysis conducted in this study con rms the monophyly of nine superfamilies, including Yponomeutoidea, Tortricoidea, Zygaenoidea, Cossoidea, Gelechioidea, Bombycoidea, Geometroidea, and Noctuoidea, which aligns with ndings from previous research (Li et al, 2010;Mitter et al, 2017;Kawahara er al., 2019). However, due to the limited number of samples, the positioning of Copromorphoidea within the tree varied depending on the construction method used.…”

Section: Discussionsupporting

confidence: 90%

“…Subsequently, molecular data analysis using multi-gene combinations has become increasingly mainstream. Notably, many studies have utilized mitochondrial genes for phylogenetic analysis (Hong et al, 2008;Regier et al, 2009;Li et al, 2010;Feng et al, 2010;Wang et al, 2019;Bao et al, 2020). Concurrently, the joint analysis of mitochondrial and nuclear genes has also become relatively common (Abraham et al, 2001;Mutanen et al, 2010;Wu et al, 2010;Wang et al, 2015;Rota et al, 2016;Kawahara et al, 2017).…”

Section: Introductionmentioning

confidence: 99%

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Comparative mitochondrial genomics unveils the phylogenetic relationships of lepidopteran moths

Liang,

Zhang,

et al. 2024

Preprint

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Background Moths constitute the largest group within Lepidoptera and play a crucial role in natural ecosystems. However, the current high-level classification system of Lepidopteran insects necessitates systematic research supported by comprehensive data. Results In this study, we determined the complete mitochondrial genomes of 80 lepidopteran moth species, spanning 68 genera across 13 families. Through a synthesis of published data, we conducted a comparative analysis encompassing 211 moth species from 12 superfamilies. Our analysis unveiled a mitochondrial genome length range of 15,027 to 17,049 bp, with an AT content varying between 77.02% and 83.52%. While gene composition and arrangement were largely conserved, we observed tRNA rearrangement (trnS1-trnE inversion) in Zygaenidae and Gelechiidae families. Phylogenetic analyses highlighted the monophyly of 9 superfamilies, with exceptions for Tineoidea, Pyraloidea, and Drepanoidea. Divergence time estimations suggest an origin of the 12 Lepidopteran superfamilies in the mid-Cretaceous period, approximately 122.27 million years ago (95% CI: 102.43-153.23 Mya). Furthermore, we propose reclassifications to refine the taxonomic status of certain families. This includes reclassifying Gracillariidae and Thyrididae as independent from the Tineoidea and Pyraloidea superfamilies, respectively, and relocating the family Epicopeiidae to the Geometroidea superfamily from Drepanoidea. Conclusion We performed a comprehensive comparative analysis of mitochondrial genomes from 211 moth species. Using various tree-building methods and datasets, we reconstructed the higher-level phylogeny of moths across 12 superfamilies of Lepidoptera and further proposed taxonomic revisions for several groups. Our study significantly enriches the molecular dataset for moth systematics and offers new insights into the evolutionary history and phylogeny of Lepidoptera.

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Section: Discussionsupporting

confidence: 90%

Section: Introductionmentioning

confidence: 99%

Comparative mitochondrial genomics unveils the phylogenetic relationships of lepidopteran moths

Liang,

Zhang,

et al. 2024

Preprint

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“…Based on mitochondrial genes encoding for the research of the phylogenetic relationship of species in arthropod Orthoptera [54,55], Lepidoptera [56,57], and Diptera [12,58], as well as crustaceans [59], fish [53], and vertebrates, the results show that the concatenation of multiple genes in mitochondria can better resolve phylogenetic relationships among species. In this study, the phylogenetic results of 28 species…”

Section: Conclusion and Discussionmentioning

confidence: 99%

Comparative Analysis among 6 Subfamilies of Membracoidea based on the Concatenated Protein-coding Genes of Mitochondrial Genomes

2022

JRSE

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Membracidae belongs to Hemiptera, and is one of the most important insect groups in the world. Insect mitochondrial genes are commonly used and effective molecular markers in insect molecular and evolutionary studies. In this study, the phylogenetic relationships of 28 species in 6 subfamilies of Membracoidea, which most of the species are from the Eastern Hemisphere were discussed based on mitochondrial protein-coding genes. The phylogenetic trees were constructed by the Neighbor-Joining method, maximum likelihood method, and Bayesian method. That is, in 28 species of Membracoidea, Membracidae was usually placed as the sister clade to Cicadellidae, within Membracidae, the 13 species in this study represent two subfamilies, Centrotinae and Smillinae. The inferred relationship was ((E. carinata + S. bisonia) + (H. hardwickii + (((A. yunnanense + A. lineatum) + (L. sp. HL-2012+ L. gazella)) + (L. albolineatus + (T. longivalvulatus+ ((M. qinlingensis+ G. genistae) + (T. sp.EMHAU-15062504+ T. brunneus))))))). The evolutionary status and taxonomic attribution of 28 species of Membracoidea are consistent with the traditional taxonomic results.

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Complete mitochondrial genome of Bactrocera arecae (Insecta: Tephritidae) by next-generation sequencing and molecular phylogeny of Dacini tribe

Yong

Song

Lim

et al. 2015

Sci Rep

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The whole mitochondrial genome of the pest fruit fly Bactrocera arecae was obtained from next-generation sequencing of genomic DNA. It had a total length of 15,900 bp, consisting of 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes and a non-coding region (A + T-rich control region). The control region (952 bp) was flanked by rrnS and trnI genes. The start codons included 6 ATG, 3 ATT and 1 each of ATA, ATC, GTG and TCG. Eight TAA, two TAG, one incomplete TA and two incomplete T stop codons were represented in the protein-coding genes. The cloverleaf structure for trnS1 lacked the D-loop, and that of trnN and trnF lacked the TΨC-loop. Molecular phylogeny based on 13 protein-coding genes was concordant with 37 mitochondrial genes, with B. arecae having closest genetic affinity to B. tryoni. The subgenus Bactrocera of Dacini tribe and the Dacinae subfamily (Dacini and Ceratitidini tribes) were monophyletic. The whole mitogenome of B. arecae will serve as a useful dataset for studying the genetics, systematics and phylogenetic relationships of the many species of Bactrocera genus in particular, and tephritid fruit flies in general.

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Phylogenetic Analysis Within Tephritidae of Diptera Based on the Concatenated 13 Mitochondrial Protein Coding Genes of mt Genomes

Cited by 3 publications

References 10 publications

Comparative mitochondrial genomics unveils the phylogenetic relationships of lepidopteran moths

Comparative mitochondrial genomics unveils the phylogenetic relationships of lepidopteran moths

Comparative Analysis among 6 Subfamilies of Membracoidea based on the Concatenated Protein-coding Genes of Mitochondrial Genomes

Complete mitochondrial genome of Bactrocera arecae (Insecta: Tephritidae) by next-generation sequencing and molecular phylogeny of Dacini tribe

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