Phylogenetic analysis of the complete mitogenome sequence of the raspberry weevil, Aegorhinus superciliosus (Coleoptera: Curculionidae), supports monophyly of the tribe Aterpini

Cabrera-Brandt, Marco A; Gaitán‐Espitía, Juan Diego

doi:10.1016/j.gene.2015.06.059

Cited by 4 publications

(6 citation statements)

References 47 publications

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“…The difficulty in identifying tRNA Ile most likely stems from its location, as the gene has been found within a large non-coding region, either unannotated or annotated as the control All expected tRNAs were identified and annotated in the mitogenome sequence of A. oleae, except tRNA Ile . This gene was also not identified in other Curculionidae species included in this study, as noted in numerous previous works [34,36,38,50,55,68,69]. The difficulty in identifying tRNA Ile most likely stems from its location, as the gene has been found within a large non-coding region, either unannotated or annotated as the control region.…”

Section: The Mitochondrial Genome Of Anchonocranus Oleaementioning

confidence: 53%

“…The Ion Torrent run generated a total of 15,006,094 reads with an average size of 170 bp, of which 6533 reads were mapped to the reference mitogenome with an average coverage of 69X. The final consensus sequence was 14,725 bp long (excluding the AT-rich region), in line with the range found in other Curculionidae [ 34 ]. The common metazoan complement of 13 PCGs and two rRNAs was identified, as well as the non-coding (AT-rich) region containing the control for mitogenomic replication and transcription ( Table 2 ; Figure 3 ).…”

Section: Resultsmentioning

confidence: 99%

“…The phylogenetic position of A. oleae in Curculionidae was inferred in the context of the mitogenomes of 74 other species representing 11 subfamilies across 50 tribes, with Anoplophora glabripennis (Cerambycidae) and Crioceris duodecimpunctata (Chrysomelidae) as outgroups [ 23 , 34 , 35 , 36 , 37 , 38 , 39 , 40 , 41 , 42 , 43 , 44 , 45 , 46 , 47 , 48 , 49 , 50 , 51 , 52 , 53 , 54 , 55 , 56 , 57 ] ( Table S1 ). Among the numerous weevil mitogenomes available on GenBank, these were selected because they represent the greatest available diversity of potentially related taxa in the Curculioninae, Conoderinae, Cossoninae, Molytinae, and Scolytinae (CCCMS) clade of the family Curculionidae [ 58 ], in which Anchonocranus evidently belongs, in particular of tribes in the current subfamily Curculioninae, in which it has been traditionally classified.…”

Section: Methodsmentioning

confidence: 99%

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Mitogenomics of the Olive Seed Weevil, Anchonocranus oleae Marshall and Implications for Its Phylogenetic Position in Curculionidae

Smit

Allsopp

Nethavhani

et al. 2022

Insects

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Anchonocranus oleae Marshall (Coleoptera: Curculionidae) is a seed-feeding weevil native to southern Africa; its larvae are known to develop in the fruits of the African Wild Olive and, more rarely, cultivated olives. The species has been mainly found in the Western Cape province of South Africa, but it has remained in relative obscurity because it does not seem to represent a current threat to commercial olive production. As part of an ongoing effort to produce baseline genetic data for olive-associated entomofauna in South Africa, we generated reference DNA barcodes for A. oleae collected from wild and cultivated olives and sequenced its mitogenome for assessment of the phylogenetic position of the species in the family Curculionidae. The mitochondrial phylogeny estimate indicated that A. oleae shares a common ancestor with Elaidobius (tribe Derelomini), but a definite and close relationship to this tribe and the precise tribal placement of A. oleae in the subfamily Curculioninae could not be inferred due to the lack of representative mitogenomes of other relevant curculionine tribes and genera. This study will assist future work on the DNA-based species identification, genetic diversity, and phylogenetic position of the genus Anchonocranus and related taxa.

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Section: The Mitochondrial Genome Of Anchonocranus Oleaementioning

confidence: 53%

Section: Resultsmentioning

confidence: 99%

Section: Methodsmentioning

confidence: 99%

See 1 more Smart Citation

Mitogenomics of the Olive Seed Weevil, Anchonocranus oleae Marshall and Implications for Its Phylogenetic Position in Curculionidae

Smit

Allsopp

Nethavhani

et al. 2022

Insects

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“…Mitogenome analysis is imperative to make inferences on species phylogenies and resolving species divergence at different taxonomic levels 29,30 . In the present study, size of the complete mitogenome of HBB (U.t.…”

Section: Resultsmentioning

confidence: 99%

Assembling mitogenome of Himalayan Black Bear (U. t. laniger) from low depth reads and its application in drawing phylogenetic inferences

Bit

Thakur

Singh

et al. 2021

Sci Rep

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The complete mitogenome of Himalayan black bear (Ursus thibetanus laniger) from Indian Himalayan region was assembled following the modified approach of mitochondrial baiting and mapping using the next-generation sequencing reads. The complete mitogenome was of 16,556 bp long, consisted of 37 genes that contained 13 protein-coding genes, 22 tRNAs, 2 rRNAs and 1 control region. The complete base composition was 31.33% A, 15.24% G, 25.45%C, and 27.98%T and gene arrangement was similar to the other sub-species of Asiatic black bear. The relative synonymous codon usage analysis revealed the maximum abundance of Isoleucine, Tyrosine, Leucine and Threonine. The assembled mitogenome of U. t. laniger exhibited 99% similarity with the mitogenomes of Himalayan black bear available from Nepal and Tibetan Plateau-Himalaya region. The findings of the present study has proven low depth sequencing data, adequate and highly efficient in rapid recovering the mitochondrial genome by overcoming the conventional strategies of obtaining long-range PCR and subsequently drawing phylogenetic inferences.

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“…At present, compared with the whole genome data, mitogenome sequencing allows for much larger scale sampling. Especially in recent years, the advent of next-generation sequencing (NGS) techniques have revolutionized the ease with which mitogenome data can be obtained time- and also cost-effectively for large taxon sampling of insects 26 , 30 – 36 .…”

Section: Introductionmentioning

confidence: 99%

Deep-level phylogeny of Cicadomorpha inferred from mitochondrial genomes sequenced by NGS

Song

Cai

2017

Sci Rep

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Recent development and advancement of next-generation sequencing (NGS) technologies have enabled the determination of mitochondrial genome (mitogenome) at extremely efficiency. In this study, complete or partial mitogenomes for 19 cicadomorphan species and six fulgoroid species were reconstructed by using the method of high-throughput sequencing from pooled DNA samples. Annotation analyses showed that the mitogenomes obtained have the typical insect mitogenomic content and structure. Combined with the existing hemipteran mitogenomes, a series of datasets with all 37 mitochondrial genes (up to 14,381 nt total) under different coding schemes were compiled to test previous hypotheses of deep-level phylogeny of Cicadomorpha. Thirty-seven species representing Cicadomorpha constituted the ingroup. A taxon sampling with nine species from Fulgoroidea and six from Heteroptera comprised the outgroup. The phylogenetic reconstructions congruently recovered the monophyly of each superfamily within Cicadomorpha. Furthermore, the hypothesis (Membracoidea + (Cicadoidea + Cercopoidea)) was strongly supported under the heterogeneous CAT model.

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Phylogenetic analysis of the complete mitogenome sequence of the raspberry weevil, Aegorhinus superciliosus (Coleoptera: Curculionidae), supports monophyly of the tribe Aterpini

Cited by 4 publications

References 47 publications

Mitogenomics of the Olive Seed Weevil, Anchonocranus oleae Marshall and Implications for Its Phylogenetic Position in Curculionidae

Mitogenomics of the Olive Seed Weevil, Anchonocranus oleae Marshall and Implications for Its Phylogenetic Position in Curculionidae

Assembling mitogenome of Himalayan Black Bear (U. t. laniger) from low depth reads and its application in drawing phylogenetic inferences

Deep-level phylogeny of Cicadomorpha inferred from mitochondrial genomes sequenced by NGS

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