Phylogenetic analysis of dengue virus types 1 and 3 isolated in Jakarta, Indonesia in 1988

Sjatha, Fithriyah; Takizawa, Yamato; Yamanaka, Akira; Konishi, Eiji

doi:10.1016/j.meegid.2012.08.006

Cited by 10 publications

(12 citation statements)

References 27 publications

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“…A full assessment of the 120 references resulted in the exclusion of 53 references due to the following: full texts were unavailable, and the available abstracts did not include adequate information to satisfy our outcome, the full text did not include adequate or complete serotype data, and nonstandard methods were used for serotyping. This resulted in 67 eligible studies, of which 13 references were from national journals . An additional 11 studies were included from reference list .…”

Section: Resultsmentioning

confidence: 99%

“…In total, 78 eligible studies were included for DENV serotype analysis . Of all the eligible studies, four studies were conducted based on mosquito isolates while the remaining studies assessed DENV isolates from human samples . Sixty two studies investigated dengue cases among local inhabitants of Indonesia,…”

Section: Resultsmentioning

confidence: 99%

“…Of all the eligible studies, four studies were conducted based on mosquito isolates while the remaining studies assessed DENV isolates from human samples . Sixty two studies investigated dengue cases among local inhabitants of Indonesia, and the remaining 16 reported traveller‐associated dengue cases from other countries …”

Section: Resultsmentioning

confidence: 99%

“…Our group has previously conducted studies relating to the molecular epidemiology of dengue in several major Indonesian cities, including Bali, Jakarta, Jambi, Makassar, Semarang, Sukabumi, Surabaya, and Purwokerto . Similar studies have also been conducted in other regions of Indonesia, with local inhabitants or travellers returning from Indonesia . Although these studies have been important for determining DENV serotypes, genotypes, and lineages circulating in Indonesia, the data reported represent only single cities or sites at a particular time and fail to provide a comprehensive picture of circulating DENV throughout Indonesia over time.…”

Section: Introductionmentioning

confidence: 99%

See 3 more Smart Citations

Dengue viruses circulating in Indonesia: A systematic review and phylogenetic analysis of data from five decades

Harapan

Michie

Yohan

et al. 2019

Reviews in Medical Virology

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Although epidemiological and molecular epidemiological (serotype, genotype, and lineage information) data are available for several major cities in Indonesia, there is yet to be a comprehensive national study of dengue in Indonesia over time. This study was conducted to provide a comprehensive epidemiology of circulating dengue viruses (DENV) in Indonesia between 1973 and 2016. This was conducted through a systematic review of the literature and phylogenetic analysis of available DENV sequences. Available data from National Disease Surveillance System have indicated an increasing trend of dengue incidence in Indonesia over the past 50 years. Incidence rates appear to be cyclic, peaking approximately every 6 to 8 years. In contrast, the case fatality rate has decreased approximately by half with each decade since 1980.Over this 50-year time span, serotype shifts, genotype displacement within DENV-1 and DENV-2, and introduction of DENV-1 and DENV-3 genotype from other countries occurred. These events were associated with increased incidence of dengue cases. Our study also provides a valuable national snapshot of DENV genetic diversity in Indonesia that may contribute to development of more effective dengue vaccine compositions for the region.

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Section: Resultsmentioning

confidence: 99%

Section: Resultsmentioning

confidence: 99%

Section: Resultsmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

See 2 more Smart Citations

Dengue viruses circulating in Indonesia: A systematic review and phylogenetic analysis of data from five decades

Harapan

Michie

Yohan

et al. 2019

Reviews in Medical Virology

View full text Add to dashboard Cite

show abstract

“…There were 49 nucleotide differences between these isolates, which translated into 6 amino acid substitutions. Phylogenetic analysis was conducted using MEGA 5.2 and BEAST v1.5.3 softwares (13)(14)(15). The analysis revealed that the 2 DENV-3 isolates were of genotype I, which has been reported to spread from Indonesia (6) (Fig.…”

mentioning

confidence: 99%