Phototroph-heterotroph interactions during growth and long-term starvation across Prochlorococcus and Alteromonas diversity

Abstract

Interactions among microorganisms are ubiquitous, yet to what extent strain-level diversity affects interactions is unclear. Phototroph-heterotroph interactions in marine environments have been studied intensively, due to their potential impact on ocean ecosystems and biogeochemistry. Here, we characterize the interactions between five strains each of two globally abundant marine bacteria, Prochlorococcus (a phototroph) and Alteromonas (a heterotroph), from the first encounter between individual strains and over more than a year of subsequent co-culturing. Prochlorococcus-Alteromonas interactions affected primarily the dynamics of culture decline, which we interpret as representing cell mortality and lysis. The shape of the decline curve and the carrying capacity of the co-cultures were determined by the phototroph and not the heterotroph strains involved. Comparing various models of culture mortality suggests that death rate increases over time in mono-cultures but decreases in co-cultures, with cells potentially becoming more resistant to stress. During 435 days of co-culture, mutations accumulated in one Prochlorococcus strain (MIT9313) in genes involved in nitrogen metabolism and the stringent response, indicating that these processes occur during long-term nitrogen starvation. Our results suggest potential mechanisms involved in long-term starvation survival in co-culture, and highlight the information-rich growth and death curves as a useful readout of the interaction phenotype.