There has been significant interest on the effects of UV-light excitation on the structure and function of proteins and peptides. [1] UV-light excitation has diverse and emerging roles in biological, medical and industrial processes. Photo-induced damage of proteins occurs via endogenous chromophores, such as tryptophan, tyrosine, phenylalanine, histidine, cysteine and/or cystine. [2] Data derived from investigation of various proteins (e.g. goat α-lactalbumin, [3] immunglobulins, [4] cutinase [5] and bovine growth hormone [6] ) show that tryptophan residues may be the primary motifs in the initiation of protein photodegradation.Free cysteine thiyl radicals (CysS•) can be formed as a result of disulfide photolysis due to photoionization of the Trp residues of the polypeptide chain. However, photolytic split of disulfide bonds could strongly depend on the microenviroment of both moieties. Trpmediated photolysis may occur at appropriate distance from the disulfide bridge. Several photolysis experiments were carried out using lower (λ=253.7 nm) and/or higher (λ=280-300 nm) wavelengths to provide evidence for disproportionation mechanism of disulfide photolysis. [7] Due to the reactivity of free thiyl radicals and of sulfhydryl groups, instant and sensitive detection of disulfide splitting is still a challenge.Various methods and reagents have been reported in the literature for revealing free sulfhydryl moiety. Depending on the required detection limit, various thiol-reactive probes have been used for detection of sulfhydryl species, such as Ellman's reagent, [8] iodoacetamide-and maleimide-derivatives. [9] Among these probes, several fluorogenic agents are available for derivatization followed by detection. Fluorescent probes provide sensitive methodology for indirect detection of free sulfhydryl groups; however, these reagents are generally not suitable for the localization of cysteine residues in the polypeptide sequence. 7-diethylamino-3-(4'-maleimidophenyl)-4-methylcoumarin (CPM) [10] could be considered as a fast and very sensitive fluorogenic reagent for capturing free sulfhydryl groups. The CPMpeptide/protein derivative formed in the addition reaction has a measurable, strong fluorescence, while the CPM reagent does not show any fluorescence in this wavelength 4 region ( ex =384 nm em =475 nm). Thus, the increased fluorescence intensity can be utilized for quantitative determination of thiols.The aim of our work was to investigate the effect of CPM tagging on peptide MS/MS fragmentation behaviour, because a combination of fluorescent labelling and peptide sequencing with tandem mass spectrometry could be an excellent tool for a sensitive sulfhydryl detection as well as localization of the free Cys sulfhydryl group. Therefore, in this study, a set of Cys containing model oligopeptides and their fluorescent derivatives with CPM tags were synthesized and analysed by tandem mass spectrometry (Figure 1).Fmoc-Cys(Trt)-COOH was obtained from Reanal (Budapest, Hungary), all other amino acid derivatives and Fmo...