IntroductionBacterial inclusion bodies (IB, inclusion body) are highly pure protein deposits produced by recombinant bacteria in the size range of a few hundred nanometers [1]. The polypeptide chains that form IBs usually retain a certain degree of native-like structure, keeping their biological activity (e.g., fluorescence or enzymatic activity), and as a result are suitable for use as functional and biocompatible materials. In this chapter we characterize the relevant nanometer-scale properties of IBs and present the extent to which they can be tailored by simple approaches. As the IB size is within the range of mammalian cell micro-and nano-environment topology influencing mammalian cell proliferation, random surface decoration and patterning with IBs has a significant and positive impact on cell growth, making them promising biomaterials for tissue engineering. Despite their enormous potential as noncytotoxic nanomaterials producible by cost effective, scalable procedures, the chemical, mechanical, and nanoscale properties of IBs remain essentially unexplored.Many recombinant polypeptides produced in bacteria aggregate as IBs. These protein deposits appear as highly hydrated, chemically pure particles, as the recombinant protein itself is the main component -up to around 95% of the protein therein [2][3][4]. While in the past IBs were believed to be formed by unfolded or largely misfolded polypeptide chains and therefore biologically inert [5], more recent insights show them to be constituted by folded and biofunctional protein species [6], whose presence is allowed by a particular amyloid-like organization [7][8][9]. Therefore, IBs formed by enzymes such as β-galactosidase, D-amino acid oxidase, maltodextrin phosphorylase, sialic acid aldolase, and polyphosphate kinase [10][11][12][13] can be used as catalysts in different processes. In addition, the in vivo formation of IBs is regulated by several genes (mainly encoding proteases and chaperones), which makes the genetic manipulation of their nanometer-scale properties feasible [14,15].