Over the past 2 decades, significant effort has been dedicated to the development of adeno-associated virus (AAV) as a vector for human gene therapy. However, understanding of the virus with respect to the functional domains of the capsid remains incomplete. In this study, the goal was to further examine the role of the unique Vp1 N terminus, the N terminus plus the recently identified nuclear localization signal (NLS) (J. C. Grieger, S. Snowdy, and R. J. Samulski, J. Virol 80:5199-5210, 2006), and the virion pore at the fivefold axis in infection. We generated two Vp1 fusion proteins (Vp1 and Vp1NLS) linked to the 8-kDa chemokine domain of rat fractalkine (FKN) for the purpose of surface exposure upon assembly of the virion, as previously described (K. H. Warrington, Jr., O. S. Gorbatyuk, J. K. Harrison, S. R. Opie, S. Zolotukhin, and N. Muzyczka, J. Virol 78:6595-6609, 2004). The unique Vp1 N termini were found to be exposed on the surfaces of these capsids and maintained their phospholipase A2 (PLA2) activity, as determined by native dot blot Western and PLA2 assays, respectively. Incorporation of the fusions into AAV type 2 capsids lacking a wild-type Vp1, i.e., Vp2/Vp3 and Vp3 capsid only, increased infectivity by 3-to 5-fold (Vp1FKN) and 10-to 100-fold (Vp1NLSFKN), respectively. However, the surface-exposed fusions did not restore infectivity to AAV virions containing mutations at a conserved leucine (Leu336Ala, Leu336Cys, or Leu336Trp) located at the base of the fivefold pore. EM analyses suggest that Leu336 may play a role in global structural changes to the virion directly impacting downstream conformational changes essential for infectivity and not only have local effects within the pore, as previously suggested.Adeno-associated virus (AAV) is a member of the parvovirus family. It is a single-stranded DNA virus with a genome of ϳ4.7 kb that is dependent upon coinfection with helper viruses, such as adenovirus or herpesvirus, for efficient reproduction (5, 7). This small genome encodes four nonstructural proteins (Rep78, and three viral capsid proteins, Vp1, Vp2, and Vp3 (29,36). The Rep proteins are multifunctional and play roles in almost every aspect of the life cycle of AAV, including replication, transcription, integration, and packaging of the genome into the preformed empty capsid (10, 23). Vp1, Vp2, and Vp3 are incorporated into capsids at a predicted ratio of 1:1:8 and have overlapping sequences, differing only at their N termini. Vp2 is 137 amino acids shorter than Vp1 and is the product of an alternative start codon, while Vp3 is 65 residues shorter than Vp2.The structure of AAV type 2 (AAV2) has been determined at 3-Å resolution by X-ray crystallography. In addition, the capsid structures of other parvoviruses have been resolved by X-ray crystallography or cryoelectron microscopy (cryo-EM) and image reconstruction (1-3, 25, 26, 31, 34, 40, 42, 45, 48, 49). The parvovirus virion is composed of 60 subunits of the overlapping Vp (ϳ530 C-terminal amino acids) region arranged with T ϭ 1 icosahed...