We cloned and characterized three genes from Aspergillus nidulans, designated brUA, abaA, and wetA, whose activities are required to complete different stages of conidiophore development. Inactivation of these genes causes major abnormalities in conidiophore morphology and prevents expression of many unrelated, developmentally regulated genes, without affecting the expression of nonregulated genes. The three genes code for poly(A)+ RNAs that begin to accumulate at different times during conidiation. The briA-and abaA-encoded RNAs accumulate specifically in cells of the conidiophore. The weL4-encoded RNA accumulates in mature conidia. Inactivation of the brL4 gene prevents expression of the abaA and wet4 genes, whereas inactivation of the abaA gene prevents expression of the wetA gene. Our results confirm genetic predictions as to the temporal and spatial patterns of expression of these genes and demonstrate that these patterns are specified at the level of RNA accumulation.The mitotically derived spores, or conidia, of the ascomycetous fungus Aspergillus nidulans are produced on multicellular structures called conidiophores (14). Scanning electron microscope images of developing conidiophores are shown in Fig. 1. Under appropriate conditions, certain hyphal elements (Fig. 1A) differentiate into thick-walled foot cells and produce aerial stalk initials (Fig. 1B). The stalks grow away from the substratum for a defined period of time, growth stops, and a multinucleated vesicle forms by swelling of the stalk apex (Fig. 1C). A layer of primary sterigmata, or metullae, is formed on the surface of the vesicle by budding (Fig. 1D), and a single nucleus enters each cell. The metullae undergo a single division to produce a layer of secondary sporogenous sterigmata, or phialides (Fig. 1E). Conidia are formed following mitotic divisions of the phialide nucleus (Fig. 1F). After each division, one daughter nucleus is retained within the phialide, where it continues to undergo mitoses. The other daughter nucleus enters the tip of the phialide which buds off to form a conidium. As this process continues, previously formed conidia are displaced by newly formed conidia, producing a long chain of clonally derived spores at various stages of maturity. We have previously shown that conidiophore development in A. nidulans involves the stage-and cell-type-specific expression of approximately 1,000 different genes (15).The genetic mechanisms that control the differentiation and spatial organization of conidiophore cells have been investigated by Clutterbuck and co-workers, who isolated a variety of mutant strains with altered conidiophore morphologies (1,2,4,10). Many of the mutations they studied are conidiophore specific, having little or no detectable effect on hyphal growth or sexual reproduction. The mechanisms by which the genes identified by these mutations bring about the orderly assembly of the asexual reproductive apparatus are unknown.Mutations in three genes cause major developmental defects and thus are of particular inter...