crE is a sporulation-specific sigma factor ofBacilus subtilis that is formed from an inactive precursor protein (pro-cE) by the removal of 27 to 29 amino acids from the pro-oE amino terminus. By using oligonucleotidedirected mutagenesis, sequential deletions were constructed in the precursor-specific region of sigE and analyzed for their effect on the gene product's activity, ability to accumulate, and susceptibility to conversion into mature &E. The results demonstrated that the first 17 residues of the pro sequence contribute to silencing the r-like activity of pro-cr and that the amino acids between positions 12 and 17 are also important for its conversion into cE. Deletions that remove 21 or more codons from sigE reduce crE activity in cells which carry it, presumably by affecting prodrE stability. A 26-codon deletion results in a gene whose product is not detectable in B. subtilis by either reporter gene activity or Western blot (immunoblot) assay. The primary structure as well as the size of the pro region of c1r contributes to the protein's stability. The placement of additional amino acids into the pro region reduces the cell's ability to accumulate pro-oE. Additional sigE mutations revealed that the amino acids normally found at the putative processing site(s) of pro-cr are not essential to the processing reaction; however, a Glu residue upstream of these sites (position 25) was found to be important for processing.These last results suggest that the pro-IrF processing apparatus does not recognize the actual site within procr.E at which cleavage occurs but rather sequence elements that are upstream of this site.Bacillus subtilis synthesizes at least four sporulationspecific sigma factors (yEs, oF, cG, and ci) that are critical for orchestrating the temporal and compartmental patterns of gene expression that occur throughout endospore formation (12). &rE is the most abundant of these regulatory proteins during the early stages of spore formation (3). If a cell fails to synthesize o--, its development proceeds to the point where the cell partitions itself into forespore and mother cell compartments (stage II) but fails to progress beyond that stage (11). Transcription of the operon that encodes &E (spoIIG [22]) begins at the onset of sporulation and requires the sporulation gene activator, SpoOA, for its expression (7,8, 171. In addition to transcriptional regulation, synthesis of oe is also controlled posttranslationally. The initial protein product of the or-structural gene (sigEl spoIIGB) is an inactive precursor form of cre (pro-&e) (11,23). Pro-oe is converted into &e by proteolytic activity that removes 27 to 29 amino acids from the pro-&e amino terminus (11,12). Mutants that fail to convert pro-&e into cE have the same Spo-phenotype as those with null mutations in &e itself (4). The activity that cleaves the pro sequence from aE is itself developmentally regulated (24). It appears approximately 1 h after the onset of pro-o-synthesis if the products of at least six spo genes (4) and the cell divisi...