p-Coumaroyl-CoA 3 -hydroxylase (C3 H) is a cytochrome P450-dependent monooxygenase that catalyzes the 3 -hydroxylation of p-coumaroyl shikimate and p-coumaroyl quinate. We used RNA interference to generate transgenic hybrid poplar suppressed in C3 H expression and analyzed them with respect to transcript abundance, cell wall structure and chemical composition, and soluble metabolite levels. RT-PCR expression profiles confirmed the down-regulation of C3 H in a number of lines, which generally correlated very well with reduced total cell wall lignin content. The most strongly repressed line was chosen for further analysis and compared with the wild-type trees. In-depth characterization revealed that along with the significant decrease in total lignin content, a significant shift in lignin monomer composition was observed, favoring the generation of p-hydroxyphenyl units at the expense of guaiacyl units while the proportion of syringyl moieties remained constant. Suppression of C3 H also resulted in the accumulation of substantial pools of 1-O-p-coumaroyl--D-glucoside and other phenylpropanoid glycosides, and p-coumaroyl shikimate, providing further insight into the role of C3 H in the lignin biosynthetic pathway. The data presented indicate that when down-regulated, C3 H becomes a rate-limiting step in lignin biosynthesis and further support the involvement of hydroxycinnamic acid shikimate esters in the lignin biosynthetic pathway.phenolic glucosides ͉ syringyl lignin ͉ CYP98 ͉ C3ЈH I n recent years, most of the genes encoding enzymes specific to the lignin branch of the phenylpropanoid pathway have been cloned and their roles evaluated by using a combination of forward and reverse genetics (1). Lignin itself is a complex, phenolic-based polymer derived from monolignol precursors, which provides structural support, enables water transport, and contributes to plant defense mechanisms against both biotic and abiotic stresses (2). Despite the extensive amount of work that has focused on this important and abundant biopolymer, two key aspects have been elusive: its native three-dimensional structure and operationally effective mechanisms for its removal from the cell wall.The genes encoding the cytochrome P450-dependent monooxygenases (P450s) cinnamate 4-hydroxylase (C4H) and ferulate 5-hydroxylase (F5H) have been analyzed and evaluated extensively in transgenic plants (3-5). C4H is responsible for the 4-hydroxylation of cinnamic acid (6), whereas F5H hydroxylates the 5 position of ferulic acid, coniferaldehyde, and coniferyl alcohol, although only the latter two are currently considered to be the relevant substrates in vivo (7,8). The nature of the enzyme that catalyzes hydroxylation at the 3 position of the phenolic ring has been the source of long debate; however, several P450s of the CYP98A class were identified recently as coumaroyl shikimate/quinate 3Ј-hydroxylases (C3ЈH) involved in cell wall lignification (2, 9).The role of CYP98A3 in lignification was demonstrated by the characterization of an Arabidopsis m...