Patterning and immobilizing protein biomolecules with nanosized dimension is important in the development of applications ranging from biochip arrays [1][2][3] and biosensors [4][5][6] to electronic devices. [7,8] Protein nanocages, such as horse spleen ferritin, HSF, (12 nm in diameter) with magnetic cores (8 nm in diameter), [9] have the distinct advantage over synthetic nanoparticles of being truly monodisperse in size and shape. In addition, by controlling pH, the charge on the nanocages can be manipulated, providing additional control over the interparticle separation. Provided planar, ordered arrays of the nanocages can be achieved, these attributes can be used to generate two-dimensional arrays of nanoscopic elements, in which each element is exactly the same size and shape, and the areal density and lateral packing can be manipulated by the charge on the nanocage surface. Such a strategy provides an unique pathway to overcome some of the current technological limitations in generating addressable media.[10] In the case of HSF, the iron core can be removed and replaced with other metals, like magnetite, manganese oxide, uranyl oxide, and cadmium sulfide quantum dots, [11] which further broadens their potential applications.Two-dimensional arrays of HSF have been produced at an air/ liquid interface. [12][13][14] However, practical application requires the transfer of the HSF arrays to a solid substrate, which introduces defects and disorder. Recently, an evaporation-induced convective assembly method [15] was developed to produce robust HSF arrays directly on the solid substrate by a spread-coating technique. However, achieving long-range lateral order, and controlling the orientation of the lattice formed by the assembly is difficult, making the transition to applications impractical.Here, we address these issues with planar silicon oxide substrates, prepatterned with gold nanodots that preferentially interact with end-functional thiol groups on a tether attached to the HSF. The separation distance between the nanodots was sufficient to preclude one HSF from bridging two adjacent gold nanodots, and the length of the tether was designed so that only one HSF could anchor to each gold nanodot.There are numerous routes by which arrays of gold nanodots can be prepared on planar silicon wafers, ranging from e-beam lithographic to electro-oxidative atomic force microscopic methods. However, to generate ordered arrays over large surface areas without loss of structural fidelity due to writing errors, highly parallel, self-assembly processes are required. Block copolymer (BCP) micelle lithography [16] provides a rapid, high-throughput method to fabricate arrays of regularly spaced nanodots with high areal density and lateral ordering. Here, polystyrene-block-poly(4-vinylpyridine) (PS-b-P4VP) diblock copolymer micelles [17] were spin-coated on silicon wafers or glass substrates to form uniform, monolayered micellar films that, upon annealing in a saturated tetrahydrofuran (THF) vapor environment, produced an array ...