2016
DOI: 10.1021/acs.analchem.6b03636
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Phase-Constrained Spectrum Deconvolution for Fourier Transform Mass Spectrometry

Abstract: This Article introduces a new computationally efficient noise-tolerant signal processing method, referred to as phased spectrum deconvolution method (ΦSDM), designed for Fourier transform mass spectrometry (FT MS). ΦSDM produces interference-free mass spectra with resolution beyond the Fourier transform (FT) uncertainty limit. With a presumption that the oscillation phases are preserved, the method deconvolves an observed FT spectrum into a distribution of harmonic components bound to a fixed frequency grid, w… Show more

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Cited by 44 publications
(66 citation statements)
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“…While split scans provide a pragmatic approach to obtaining improved spectral accuracy, it is hopeful that advanced Fourier transform algorithms in the future allow superior spectral accuracy, even in broad mass range scans. 23, 24 …”
Section: Resultsmentioning
confidence: 99%
“…While split scans provide a pragmatic approach to obtaining improved spectral accuracy, it is hopeful that advanced Fourier transform algorithms in the future allow superior spectral accuracy, even in broad mass range scans. 23, 24 …”
Section: Resultsmentioning
confidence: 99%
“…MS data was acquired in the dataindependent acquisition (DIA) scan mode for single-shot patient samples, using the MaxQuant Live software and spectral processing with phase-constrained spectrum deconvolution (phi-SDM) [85,86]. Full MS scans were acquired in the range of m/z 300-1,650 at a resolution of 60,000 at m/z 200 and the automatic gain control (AGC) set to 3e6.…”
Section: Lc-ms/ms Analysismentioning
confidence: 99%
“…2). This was enabled by MaxQuant.Live (Wichmann et al, 2019) with a novel signal processing algorithm for fast LC-MS/MS cycle times (Grinfeld et al, 2017). Matching to a liver tissue library of more than 10,000 proteins yielded 5,515 total quantified proteins (Methods, Supplementary Fig.…”
Section: Impact Of Hepatic Lesions On the Liver Tissue Proteomementioning
confidence: 99%
“…To scale up to our cohort of 596 participants, we took advantage of the Evosep One, a novel LC system designed for clinical studies with faster analysis time, improved robustness and throughput (Bache et al, 2018). Furthermore, we applied a hybrid BoxCar and DIA acquisition method (Ludwig et al, 2018), and a deconvolution method that doubles MS resolution (Grinfeld et al, 2017) (Methods). assessed by ANCOVA analysis on 494 plasma samples from the healthy controls (N=136) and the disease cohort with biopsy-verified histologic scores (N=358).…”
Section: Impact Of Hepatic Lesions On the Plasma Proteomementioning
confidence: 99%