Phototropin-like LOV domains form a cysteinyl-flavin adduct in response to blue light, but show dramatic variation in output signal and the lifetime of the photo-adduct signaling state. Mechanistic studies of the slow-cycling fungal LOV-photoreceptor Vivid reveal the importance of reactive cysteine conformation, flavin electronic environment and solvent accessibility for adduct scission and thermal reversion. Proton inventory, pH-effects, base catalysis and structural studies implicate flavin N 5 deprotonation as rate-determining for recovery. Substitutions of active site residues Ile74, Ile85, Met135 and Met165 alter photoadduct lifetimes by over four orders of magnitude in VVD and similar changes in other LOV proteins show analogous effects. Adduct state decay rates also correlate with changes in conformational and oligomeric properties of the protein necessary for signaling. These findings link natural sequence variation of LOV domains to function and provide a means to design broadly reactive light-sensitive probes.Light Oxygen Voltage (LOV) domains sense and respond to environmental stimuli by converting changes in cofactor chemical state to alterations in protein:protein interactions 1 . A subset of LOV domains bind flavin cofactors and function as blue-light photoreceptors in plants 2 , bacteria and fungi [3][4][5][6][7][8] , albeit with considerable differences in photocycle kinetics and output mechanisms among family members.These flavin-binding LOV domains act as reversible photo-switches to regulate a diverse array of blue-light responses, including phototropism 2 , chloroplast movemen t2 , resetting of circadian clocks 9 , and cell-cell attachment in bacteria 4 . These proteins can bind either FMN ('1') or FAD ('2'), but all form a cysteinyl flavin C4a adduct following excitation with blue light (Fig. 1). Despite undergoing essentially the same photochemical reaction, the phototropin-like LOV domains can be broken down into two groups based on their light-adapted or "on" state lifetimes: (1) fast cyclers with short-lived adduct states, exemplified by the LOV2 domains of phototropins, and (2) the slow cyclers with long-lived (stable) photo-adducts, exemplified by some phototropin LOV1 domains and the bacterial and fungal LOV photoreceptors.Whereas phototropin LOV domains have adduct state lifetimes on the order of seconds, the bacterial and fungal LOV domain photoreceptors have dramatically extended photocycles that range from hours to days. In this class, studies thus far have been confined to the photoreceptors YtvA 3,10 , LOVK 4 , a series of LOV histidine kinases 7,11 , and the circadian clock proteins FKF-1 12 , WC-1 9 and VVD 6,8 . These proteins have shown a tendency to form LOV:LOV dimers, which are either constitutive (YtvA 10 ) or undergo rapid interconversion following photoexcitation (VVD 13 ). Isolated domains for the fast cycling phototropins also dimerize but how dimerization relates to function is not yet clear 14,15 . Currently, it is not well understood *Brian R. Crane, Ph.D...