“…Such measurements are frequently used as proxies for autophagic cargo flux. However, there are a number of important limitations and potential confounding factors in the use of autophagic markers like LC3 and p62 in assessing autophagic activity ( Klionsky et al, 2021 ) including potential influences from transcriptional and translational regulation of LC3 and p62 ( Engedal et al, 2013 ; Klionsky et al, 2021 ), conjugation of LC3 to other membrane compartments than phagophores/autophagosomes ( Malhotra, 2013 ; Pimentel-Muiños and Boada-Romero, 2014 ; Durgan et al, 2021 ), conjugation of LC3 to proteins (termed “protein ATG8ylation”) ( Carosi et al, 2021 ), puncta formation due to LC3/p62 aggregation in the absence of phagophores ( Szeto et al, 2006 ; Kuma et al, 2007 ; Runwal et al, 2019 ), a high degree of uncertainty in the correlation between LC3/p62 marker flux versus actual cargo flux, and that LC3 and p62 have many other cellular functions than autophagy ( Moscat et al, 2007 ; Baisamy et al, 2009 ; Hanson et al, 2010 ; Chung et al, 2012 ; Moscat et al, 2016 ; Ramkumar et al, 2017 ; Lindner et al, 2020 ; Kumar et al, 2021 ; Nieto-Torres et al, 2021 ; Yoon et al, 2024 ) and are not always necessary for autophagy ( Sala et al, 2014 ; Szalai et al, 2015 ; Xu et al, 2015 ; Nguyen et al, 2016 ; Vaites et al, 2018 ; Luhr et al, 2019 ; Sønstevold et al, 2021 ). Therefore, the use of autophagic markers alone is insufficient for drawing solid conclusions about autophagic activity ( Klionsky et al, 2021 ).…”