Amyotrophic lateral sclerosis (ALS) is a fatal disease, characterized by the selective loss of motor neurons. Mutations in Cu/Zn superoxide dismutase (SOD1) are the second most common cause of familial ALS, and considerable evidence suggests that mutations result in a gain of toxicity due to protein misfolding. We previously demonstrated in the SOD1 G93A rat model that misfolded SOD1 exists as distinct conformers and deposits on mitochondrial subpopulations. Here, using SOD1 G93A rats coupled with conformationrestricted antibodies for misfolded SOD1 (B8H10 and AMF7-63), we identified the interactomes of the mitochondrial pools of misfolded SOD1. This strategy identified binding partners that uniquely interacted with either AMF7-63-or B8H10reactive SOD1 conformers as well as a high (McGill), Jean-Pierre Julien (Laval), Douglas Leaman (Wright State), Giovanni Manfredi (Cornell), Diana Matheoud (U. Montreal), and Timothy Miller (Washington) for contributing reagents and/or for helpful discussions throughout the project.