We investigated the uptake of monomeric carbohydrates in stream biofilms under various hydrodynamic environments. Flow velocity and biofilm structure influenced the uptake of glucose (Glc) and arabinose (Ara), 2 carbohydrate monomers differing in bioavailability. While the uptake of Glc increased with flow velocity, the uptake of Ara showed a weaker and inverse relationship with flow velocity. Microautoradiography and confocal-laser-scanning-microscopy of biofilm cryosections revealed patterns of monomer uptake over biofilm depth. Glc was preferentially taken up in the biofilm canopy, and modelled depth gradients suggested that boundary layer thickness controls external Glc mass transfer to the biofilm. In contrast, Ara uptake was uniformly distributed or concentrated in deeper biofilm layers. Overall, Glc uptake was negatively correlated with Ara uptake. We suggest that the spatial separation of monomer uptake involves unidirectional supply flux to biofilms and selective use of carbon sources of differing quality. This 'metabolic stratification' can be interpreted as an expression of the long-known carbon catabolite repression phenomenon initially described as 'diauxie' by Jacques Monod in 1942.KEY WORDS: Stream · Carbohydrate monomer · Hydrodynamics · Biofilm · Carbon catabolite repression · Mass transfer · Diauxie
Resale or republication not permitted without written consent of the publisherAquat Microb Ecol 62: [71][72][73][74][75][76][77][78][79][80][81][82][83] 2011 (Wetzel 1992). This pool provides a supplement to the heterotrophic ecosystem metabolism (Tranvik & Höfle 1987, Moran & Hodson 1994, Volk et al. 1997) and contributes to the longitudinal metabolic linkage of lotic ecosystems at larger spatial scales (Battin et al. 2003a, Kaplan & Newbold 2003.Biofilms are attached microbial communities with a spatially explicit organisation which offer ample opportunities for biotic interaction, such as co-metabolism and mutualism (Hansen et al. 2007). In streams, biofilms typically dominate microbial life and greatly influence carbon cycling (Lock et al. 1984, Battin et al. 2008. DOC uptake from the bulk liquid by biofilms is traditionally considered to be controlled by an external resistance to diffusion, imposed by the boundary layer, and by an internal resistance attributable to biofilm architectural features (Gantzer et al. 1988, Grady et al. 1999, De Beer & Kühl 2001. The intrinsic bioavailability of a given DOC molecule supposedly influences the extent of exogenous controls on its metabolism, such as the boundary layer thickness. The uptake of highly bioavailable substances, such as monomeric glucose (Glc), is at least partially controlled by hydrodynamics (Kaplan & Newbold 2003). In contrast, intrinsically less bioavailable molecules, such as arabinose (Ara), have a lower uptake rate within the biofilm; they build up lower concentration gradients across the boundary layer and should therefore be less influenced by flow conditions (Kaplan & Newbold 2003). Wholeecosystem and mesocosm experim...