Polydimethylsiloxane microchannel coupled to surface acoustic wave nebulization mass spectrometry Mass spectrometry (MS) has seen rapid growth in the biological sciences for proteomics, [1] lipidomics, [2] metabolomics, [3] and drug discovery [4,5] due to improvements in sensitivity, [6] mass accuracy and resolution, [7] as well as the ability to carry out label-free detection. [8,9] For such complex samples as mentioned above, high-performance liquid chromatography (HPLC) is frequently coupled in-line to MS to reduce the complexity that the mass spectrometer needs to examine at any moment in time. However, in most cases, coupling HPLC to MS remains a rudimentary platform comprised of a series of large capillaries using large interconnects for junctions all of which results in loss of sample. To improve on these techniques the field has adopted the use of nanocapillary separations (nano LC) and nano-electrospray ionization (ESI) emitters to increase sensitivity. [10,11] Although nano LC/ESI has greatly improved performance, the platform is expensive and offers limited configurations for complex sample handling.Recently, microfluidics has increasingly been coupled to MS instrumentation to reduce sample loss by moving preparatory steps on-chip. In the case of LC/MS, microfluidics has facilitated the integration of pre-columns for enrichment, chromatographic columns for separation, and nanospray tip for ionization, with all components integrated onto a single chip. [12,13] This has reduced much of the fluidic dead volumes found in the junction interconnects and improved detection of lower abundance samples. Integration of microfluidic devices to MS has increased the need for robust microfabricated electrospray emitters on-chip. Although microfabricated emitters are significantly more challenging to produce than pulled glass capillaries, they offer significant advantages: they are easily multiplexed, which is not possible using fused-silica capillaries in nano LC, and they can be tailor-made in numerous geometries to accommodate specific application requirements. Common techniques for fabricating emitters include laser etching of polycarbonate, [14] deep reactive ion etching of silicon, [15] and cutting [16][17][18] or moulding [19] of polydimethylsiloxane (PDMS).For many years, PDMS has been a popular substrate for the construction of microfluidic devices. This is in large part due to the low fabrication cost, rapid prototyping, and ease of integration with numerous analytical techniques. [20][21][22] With optimization, a cut PDMS microchip emitter has the ability to yield sub-nanomolar concentration detection limits and eliminates the need to interconnect an emitter.[18] However, this method faces several limitations. A charge-carrying auxiliary channel parallel to the sample channel is required to create electrical contact for the Taylor cone to form, and preparatory steps, such as long bake times [23,24] or a chemical extraction process, [18] become necessary to suppress background interference from chemicals lea...