2015 IEEE International Parallel and Distributed Processing Symposium Workshop 2015
DOI: 10.1109/ipdpsw.2015.105
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Perfect Hashing Structures for Parallel Similarity Searches

Abstract: Abstract-Seed-based heuristics have proved to be efficient for studying similarity between genetic databases with billions of base pairs. This paper focuses on algorithms and data structures for the filtering phase in seed-based heuristics, with an emphasis on efficient parallel GPU/manycores implementation. We propose a 2-stage index structure which is based on neighborhood indexing and perfect hashing techniques. This structure performs a filtering phase over the neighborhood regions around the seeds in cons… Show more

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Cited by 2 publications
(2 citation statements)
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“…Although data integration for some voxel blocks (and re-integration [7]) might, hence, be staggered to a few subsequent frames, model consistency is still ensured by the high frame rate fusion. To achieve a more reliable GPU hashing, perfect hashing approaches [3,28,49] have been proposed that aim at collision-free hashing, but are hardly applicable for online reconstruction. In the context of collision handling, mini-mizing the maximum age of the hash map, i.e.…”
Section: Hashingmentioning
confidence: 99%
“…Although data integration for some voxel blocks (and re-integration [7]) might, hence, be staggered to a few subsequent frames, model consistency is still ensured by the high frame rate fusion. To achieve a more reliable GPU hashing, perfect hashing approaches [3,28,49] have been proposed that aim at collision-free hashing, but are hardly applicable for online reconstruction. In the context of collision handling, mini-mizing the maximum age of the hash map, i.e.…”
Section: Hashingmentioning
confidence: 99%
“…Although data integration for some voxel blocks (and re-integration [7]) might, hence, be staggered to a few subsequent frames, model consistency is still ensured by the high frame rate fusion. To achieve a more reliable GPU hashing, perfect hashing approaches [3,28,48] have been proposed that aim at collision-free hashing, but are hardly applicable for online reconstruction. In the context of collision handling, mini-mizing the maximum age of the hash map, i.e.…”
Section: Hashingmentioning
confidence: 99%