Abstract:Background: Stem cell senescence and depletion are major causes of organismal aging and aging-related diseases. The NAD–SIRT1–PARP1 axis has garnered remarkable interest owing to its significant role in regulating stem cell senescence and organismal aging. Event though our recent study showes that PBX1 overexpression attenuates hair follicle-derived mesenchymal stem cell (HF-MSC) senescence and apoptosis by regulating ROS-mediated DNA damage via downregulation of PARP1 expression, suggesting PARP1 downregulati… Show more
“…This test had the capacity for high power to detect even subtle contributions from transcription factors if they had deep binding-site coverage in the input data; five factors attained genome-wide significance (Figure 3B). Among them, PBX1 (Wang et al 2021) and CREBBP (Bandyopadhyay et al 2002;Yang et al 2021) were previously implicated in cellular senescence, providing a first line of evidence for the strength of our approach to identify signatures of condition-dependent transcription factor function. The top-scoring transcription factor in our screen, a basic-helix-loop-helix leucine-zipper protein called upstream stimulatory factor 2 (USF2; Figure 3B-C), had not been experimentally characterized in stress response or senescence.…”
Section: A Genomic Screen For Senescence Transcription Factors Using ...mentioning
Cellular senescence is a program of cell cycle arrest, apoptosis resistance, and cytokine release induced by stress exposure in mammalian cells. Landmark studies in laboratory mice have characterized a number of master senescence regulators, including p16INK4a, p21, NF-kB, p53, and C/EBPβ. To discover other molecular players in senescence, we developed a screening approach to harness the evolutionary divergence between mouse species. We found that primary cells from the Mediterranean mouse Mus spretus, when treated with DNA damage to induce senescence, produced less cytokine and had less-active lysosomes than cells from laboratory M. musculus. We used allele-specific expression profiling to catalog senescence-dependent cis-regulatory variation between the species at thousands of genes. We then tested for correlation between these expression changes and interspecies sequence variants in the binding sites of transcription factors. Among the emergent candidate senescence regulators, we chose a little-studied cell cycle factor, USF2, for molecular validation. In acute irradiation experiments, cells lacking USF2 exhibited compromised DNA damage repair and response.Longer-term senescent cultures without USF2 mounted an exaggerated senescence regulatory program—shutting down cell cycle and DNA repair pathways, and turning up cytokine expression, more avidly than wild-type. We interpret these findings under a model of pro-repair, anti-senescence regulatory function by USF2. Our study affords new insights into the mechanisms by which cells commit to senescence, and serves as a validated proof of concept for natural variation-based regulator screens.
“…This test had the capacity for high power to detect even subtle contributions from transcription factors if they had deep binding-site coverage in the input data; five factors attained genome-wide significance (Figure 3B). Among them, PBX1 (Wang et al 2021) and CREBBP (Bandyopadhyay et al 2002;Yang et al 2021) were previously implicated in cellular senescence, providing a first line of evidence for the strength of our approach to identify signatures of condition-dependent transcription factor function. The top-scoring transcription factor in our screen, a basic-helix-loop-helix leucine-zipper protein called upstream stimulatory factor 2 (USF2; Figure 3B-C), had not been experimentally characterized in stress response or senescence.…”
Section: A Genomic Screen For Senescence Transcription Factors Using ...mentioning
Cellular senescence is a program of cell cycle arrest, apoptosis resistance, and cytokine release induced by stress exposure in mammalian cells. Landmark studies in laboratory mice have characterized a number of master senescence regulators, including p16INK4a, p21, NF-kB, p53, and C/EBPβ. To discover other molecular players in senescence, we developed a screening approach to harness the evolutionary divergence between mouse species. We found that primary cells from the Mediterranean mouse Mus spretus, when treated with DNA damage to induce senescence, produced less cytokine and had less-active lysosomes than cells from laboratory M. musculus. We used allele-specific expression profiling to catalog senescence-dependent cis-regulatory variation between the species at thousands of genes. We then tested for correlation between these expression changes and interspecies sequence variants in the binding sites of transcription factors. Among the emergent candidate senescence regulators, we chose a little-studied cell cycle factor, USF2, for molecular validation. In acute irradiation experiments, cells lacking USF2 exhibited compromised DNA damage repair and response.Longer-term senescent cultures without USF2 mounted an exaggerated senescence regulatory program—shutting down cell cycle and DNA repair pathways, and turning up cytokine expression, more avidly than wild-type. We interpret these findings under a model of pro-repair, anti-senescence regulatory function by USF2. Our study affords new insights into the mechanisms by which cells commit to senescence, and serves as a validated proof of concept for natural variation-based regulator screens.
“…In general, two compounds were reported to have antioxidant activity among the three main compounds, and no activity was reported for 2-dimethyl(trimethylsilylmethyl)silyloxymethyltetrahydrofuran from the samples (Pero 2009;Verma et al 2019). Besides being an antioxidant, quinic acid has anti-inflammatory (Nam et al 2019), anti-hepatitis B virus (Wang et al 2009), and hepatoprotective activities (Kim et al 2007). The biological activity Tabel 1.…”
Moringa oleifera is a tropical plant in the Moringaceae family that contains a lot of bioactive compounds. This study aimed to isolate and characterize the enzyme xanthine oxidase (XO), and conducted inhibitory tests on XO using methanol extracts of M. oleifera leaves. The xanthine oxidase enzyme isolated from bovine milk was characterized to determine the optimum pH, temperature, and substrate concentration. XO inhibition was evaluated by in vitro and in silico methods. The results of XO isolation and characterization of bovine milk showed the optimum conditions at pH 6.5, substrate concentration of 0.1 mM, and temperature 35 °C with an activity rate of 32.47 mU/mL; 21.55 mU/mL, and 21.94 mU/mL. Inhibition analysis results on methanol extract of M. oleifera leaves showed the highest activity decrease at the extract concentration of 160 ppm, with a relative inhibition value of 21.35%, while allopurinol as a positive control has a relative value inhibition of 61.21%. Relative value inhibition indicated the potential of M. oleifera leaves as a source of medicinal plants for gout sufferers. Additionally, a computational analysis was performed to observe the molecular interaction between the primary compounds of M. oleifera leaves, i.e., 5-O-acetyl-thio-octyl-β-L-rhamnofuranoside, quinic acid, and 2-dimethyl(trimethylsilylmethyl)silyloxymethyltetrahydrofuran, and XO using the molecular docking method. The finding implied that these compounds are bound to the catalytic sites of XO by hydrogen bonds and hydrophobic interactions, indicating the primary compounds of M. oleifera leaves could become XO inhibitors to treat gout disease.
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