“…The first was that fish assemblages will vary naturally in relation to a number of larger scale abiotic factors such as biogeography, reef structure, and oceanic nutrient levels, all either previously recognized or likely to have some influence in structuring coral reef communities (Heenan, Hoey, Williams, & Williams, ; Pinca et al, ; Taylor, Lindfield, & Choat, ). But at the smaller scale of reef habitat, the cover of hermatypic corals, algae, rubble, and rugosity also plays a significant role in structuring fish assemblages (Chabanet, Ralambondrainy, Amanieu, Faure, & Galzin, ; Halford, Cheal, Ryan, & Williams, ; Samoilys, Roche, Koldewey, & Turner, ). Our second hypothesis was that the abundance and biomass of coral reef fishes will vary in relation to protective management and fishing, which has been widely demonstrated in studies across the Indo‐Pacific (D'agata et al, ; DeMartini, Friedlander, Sandin, & Sala, ; Edgar et al, ; McClanahan, Graham, Calnan, & MacNeil, ).…”