2019
DOI: 10.1038/s41467-019-10591-5
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Pathologic gene network rewiring implicates PPP1R3A as a central regulator in pressure overload heart failure

Abstract: Heart failure is a leading cause of mortality, yet our understanding of the genetic interactions underlying this disease remains incomplete. Here, we harvest 1352 healthy and failing human hearts directly from transplant center operating rooms, and obtain genome-wide genotyping and gene expression measurements for a subset of 313. We build failing and non-failing cardiac regulatory gene networks, revealing important regulators and cardiac expression quantitative trait loci (eQTLs). PPP1R3A … Show more

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Cited by 25 publications
(31 citation statements)
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References 55 publications
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“…Although ACTN2 protein levels were similar in the patient compared to controls, ACTN2 transcription was higher in the patient ( Figure 1I ). To evaluate if ACTN2 is differentially expressed in DCM and heart failure, we compared ACTN2 expression levels in the left ventricle of 25 healthy individuals, 24 DCM patients, and 21 patients with ischemic heart disease from the MAGNet consortium 31, 32 . No difference in ACTN2 expression was observed in these samples ( Supplementary Figure 3 ).…”
Section: Resultsmentioning
confidence: 99%
“…Although ACTN2 protein levels were similar in the patient compared to controls, ACTN2 transcription was higher in the patient ( Figure 1I ). To evaluate if ACTN2 is differentially expressed in DCM and heart failure, we compared ACTN2 expression levels in the left ventricle of 25 healthy individuals, 24 DCM patients, and 21 patients with ischemic heart disease from the MAGNet consortium 31, 32 . No difference in ACTN2 expression was observed in these samples ( Supplementary Figure 3 ).…”
Section: Resultsmentioning
confidence: 99%
“…Cardiac hypertrophy and fibrosis could affect each other in the progression of heart failure 18 , 19 . However, interpretation of the detailed mechanism of cardiac remodeling and heart failure remains a challenge 20 , 21 . The dual-specificity phosphatases (DUSPs) family has been known to be engaged in cardiac pathophysiology 22 , 23 ; however, its effects differ with the stimulations and experimental conditions.…”
Section: Discussionmentioning
confidence: 99%
“…Neonatal rat cardiomyocytes (NRCMs) were isolated from 1 to 3-day-old Sprague-Dawley (SD) neonatal rats as previously described [19]. Brie y, neonatal rat hearts were nely minced and placed together in 0.25 % trypsin.…”
Section: Methodsmentioning
confidence: 99%