A sensitive and rapid in situ method was developed to visualize sites of single-stranded (ss) DNA in cultured cells and in experimental test animals. Anti-bromodeoxyuridine antibody recognizes the halogenated base analog incorporated into chromosomal DNA only when substituted DNA is in the single strand form. After treatment of cells with DNA-damaging agents or ␥ irradiation, ssDNA molecules form nuclear foci in a dose-dependent manner within 60 min. The mammalian recombination protein Rad51 and the replication protein A then accumulate at sites of ssDNA and form foci, suggesting that these are sites of recombinational DNA repair.Eukaryotic cells are endowed with multiple pathways to repair damaged DNA. One of the major pathways is nucleotide excision repair, which can remove a broad range of DNA lesions. Nucleotide excision repair excises oligonucleotides of 25-32 bp including the damaged DNA, filling in the single-stranded (ss) DNA gap (1). This process is very efficient and usually repairs most DNA lesions before the damaged region is replicated. However, if the replication fork meets unrepaired DNA damage, breaks may occur in one or both strands of the nascent DNA (2). Single-and double-strand breaks (DSBs) may also arise as a direct effect of many DNA-damaging agents such as ionizing radiation. Singlestrand breaks are efficiently repaired and do not represent a threat for cell survival. In contrast, DSBs are potentially lethal. DSBs may be repaired either by direct end-joining of the broken ends in a process that is mediated by the Mre11-Rad50 complex or by homologous recombination (3). In yeast, DSBs are mainly repaired by homologous recombination; genes of the Rad52 epistasis group are largely responsible for this pathway. Although mammalian cells are presumed to repair DSBs predominantly by nonhomologous end-joining (4, 5), accumulating experimental evidence suggests that homologous recombination also plays an essential role in mammalian DSB repair (6-8).DSB repair by homologous recombination starts with 5Ј to 3Ј-exonucleolytic digestion of one DNA strand, which leads to the formation of 3Ј-overhanging ssDNA tails. In Escherichia coli, this ssDNA associates with the RecA recombination enzyme, forming the ssDNA-RecA filament. This RecA-nucleoprotein filament promotes homology search by the single DNA strand and initiates the exchange between ssDNA and homologous double-stranded (ds) DNA (3, 9). Rad51 is a structural and functional eukaryotic homolog of E. coli RecA (10, 11). Similar to RecA, both yeast and mammalian Rad51 proteins form nucleoprotein filaments on ssDNA, mediating homologous pairing and strand-exchange reactions between ssDNA and homologous dsDNA (12-15). Homologous pairing and DNA-strand exchange mediated by Rad51 are facilitated in vitro by the ssDNA-binding protein, RPA (12,(16)(17)(18).In normal, cultured human cells, the HsRad51 protein is detected in multiple discrete foci in the nucleoplasm of a low number of cells by immunofluorescent antibodies. After DNA damage the percent...