Partnering with health sciences libraries to address challenges in bioimaging data management and sharing

Silkotch, Christie; García-Milián, Rolando; Hersey, Denise

doi:10.1007/s00418-023-02198-1

Cited by 2 publications

(2 citation statements)

References 33 publications

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“…The special issue begins with a detailed summary of the current challenges and opportunities that exist in electron microscopy (EM) by Poger et al ( 2023 ): The data workflow is described from the perspective of core imaging facilities, with a comprehensive overview of current solutions. In many institutes, the perhaps underappreciated role that libraries play to support and assist research scientists throughout the bioimage data life cycle in digital data management is emphasized by Silkotch et al ( 2023 ). Indeed, their field-specific knowledge and international networks are critical aspects of the support offered by library scientists in this area.…”

Section: Discussionmentioning

confidence: 99%

In focus: data management and data analysis in microscopy

Giepmans,

Taatjes,

Wolstencroft

2023

Histochem Cell Biol

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Section: Discussionmentioning

confidence: 99%

In focus: data management and data analysis in microscopy

Giepmans,

Taatjes,

Wolstencroft

2023

Histochem Cell Biol

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“…Academic libraries might be important partners, for example, for persistent identifiers. 154 Data might also be moved from an OMERO instance to a public repository to increase findability or comply with publisher requirements.…”

Section: Design the Infrastructure Conceptmentioning

confidence: 99%

A practical guide to bioimaging research data management in core facilities

Schmidt,

Boissonnet,

Dohle

et al. 2024

Journal of Microscopy

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Bioimage data are generated in diverse research fields throughout the life and biomedical sciences. Its potential for advancing scientific progress via modern, data‐driven discovery approaches reaches beyond disciplinary borders. To fully exploit this potential, it is necessary to make bioimaging data, in general, multidimensional microscopy images and image series, FAIR, that is, findable, accessible, interoperable and reusable. These FAIR principles for research data management are now widely accepted in the scientific community and have been adopted by funding agencies, policymakers and publishers. To remain competitive and at the forefront of research, implementing the FAIR principles into daily routines is an essential but challenging task for researchers and research infrastructures. Imaging core facilities, well‐established providers of access to imaging equipment and expertise, are in an excellent position to lead this transformation in bioimaging research data management. They are positioned at the intersection of research groups, IT infrastructure providers, the institution´s administration, and microscope vendors. In the frame of German BioImaging – Society for Microscopy and Image Analysis (GerBI‐GMB), cross‐institutional working groups and third‐party funded projects were initiated in recent years to advance the bioimaging community's capability and capacity for FAIR bioimage data management. Here, we provide an imaging‐core‐facility‐centric perspective outlining the experience and current strategies in Germany to facilitate the practical adoption of the FAIR principles closely aligned with the international bioimaging community. We highlight which tools and services are ready to be implemented and what the future directions for FAIR bioimage data have to offer.

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Partnering with health sciences libraries to address challenges in bioimaging data management and sharing

Cited by 2 publications

References 33 publications

In focus: data management and data analysis in microscopy

In focus: data management and data analysis in microscopy

A practical guide to bioimaging research data management in core facilities

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