ObjectivesDiscovering airway gene expression alterations associated with radiographic bronchiectasis (BE) may improve the understanding of the pathobiology of early-stage BE.MethodsPresence of radiographic BE in 173 individuals without a clinical diagnosis of BE was evaluated. Bronchial brushings from these individuals were transcriptomically profiled and analysed. Single-cell deconvolution was performed to estimate changes in cellular landscape that may be associated with early disease progression.Results20 participants have widespread radiographic BE (≥3 lobes). Transcriptomic analysis reflects biologic processes associated with BE including decreased expression of genes involved in cell adhesion and increased expression of genes involved in inflammatory pathways (655 genes FDR<0.1, log2fold-change>0.25). Deconvolution analysis suggests that radiographic BE is associated with an increased proportion of ciliated and deuterosomal cells, and a decreased proportion of basal cells. Gene expression pattens separated participants into three clusters: normal, intermediate, and bronchiectatic. The bronchiectatic cluster was enriched by participants with more lobes of radiographic BE (p<0.0001), more symptoms (p=0.002), higher SERPINA1 mutation rates (p=0.03), and higher CT-derived BE scores (p<0.0001).ConclusionsGenes involved in cell adhesion, WNT signaling, ciliogenesis, and IFN-γ pathways had altered expression in the bronchus of participants with widespread radiographic BE, possibly associated with decreased basal and increased ciliated cells. This gene expression pattern not only is highly enriched among individuals with radiographic BE, but also associated with airway-related symptoms in those without discernable radiographic BE, suggesting that it reflects a BE-associated but non-BE specific lung pathophysiogic process.