Steroid 21-hydroxylase deficiency is caused by mutations in the CYP21B gene. This gene and a highly homologous pseudogene, CYP21A, alternate with the C4A and C4B genes encoding the fourth component of complement. Steroid 21-hydroxylase deficiency causes >90%o of cases of congenital adrenal hyperplasia (1), an inherited inability to synthesize cortisol. This deficiency is inherited as a monogenic autosomal recessive trait linked to the HLA major histocompatibility complex on chromosome 6p. A gene, CYP2JB, encoding an adrenal microsomal cytochrome P-450 enzyme specific for steroid 21-hydroxylation (P-450c21 or P-450XXI), is located between genes for the transplantation antigens HLA-B and HLA-DR. This gene (also termed 21-OHase B, OH21B, CA21HB, P450C21B, or P45OXXIA2), and a 98% similar pseudogene, CYP2JA (2, 3), are immediately adjacent to and alternate with the C4B and C4A genes, respectively, encoding the fourth component of serum complement (4,5).The rare HLA haplotype A3;Bw47;DR7 is strongly associated with 21-hydroxylase deficiency and carries a deletion of the CYP2JB gene (6) and the adjacent C4B gene, as determined by Southern blot analysis of DNA from individuals homozygous for this haplotype (7). This deletion is detected when DNA is digested with any of several restriction enzymes and hybridized to cDNA or genomic probes for either the C4 or CYP21 genes. As determined in a similar manner, the common HLA haplotype AJ;B8;DR3 carries a deletion of the CYP2JA pseudogene and the C4A gene (8).While the HLA-Bw47 haplotype is found on only =10% of 21-hydroxylase deficiency alleles (9), two studies of patients who did not carry this haplotype (10, 11) found apparent deletions of CYP21B on 7 of 30 and 9 of 40 deficiency alleles, respectively, for an allele frequency of -23%. Most deletions were found in individuals heterozygous for the deletion; heterozygous deletions were detected by decreased relative intensity of the restriction fragments that were absent in homozygous deletions.Because the majority ofdeficiency alleles are not deletions, several mutant C YP21B genes have been cloned and analyzed to identify the mutations. While one point mutation has been found thus far (12), several other CYP2JB genes carry deleterious mutations that normally occur in the CYP21A pseudogene, suggesting that they might have been transferred to CYP21B in gene conversion events (13). The combined frequency of various gene conversions might be roughly equal to the apparent frequency of deletions of CYP21B.In principle, gene conversions could also affect restriction enzyme recognition sites that have been used to distinguish the CYP21A and CYP21B genes. For example, the 3.2-and 3.7-kilobase (kb) Taq I fragments associated with the CYP21A and CYP21B genes, respectively, differ in size because the CYP21A gene carries an extra Taq I site located 200 base pairs (bp) upstream from the start of transcription.