Objectives In this prospective study we aimed to determine the distribution of genotypes by multilocus variable number tandem repeat (VNTR) analysis plus analysis of the ompA gene (MLVAompA) of rectal Chlamydia trachomatis (CT) among MSM attending Brighton GUM Clinic and to examine any correlations with clinical variables including HIV status, and to isolate rectal CT cultures maximising the possibility of obtaining complete genotyping data.Methods Samples were assigned genotypes by PCR and sequencing of the markers of the MLVA-ompA genotyping system. Rectal CT was isolated in cell culture using McCoy cells. Data regarding demographics, HIV status, rectal symptoms, past history of STIs including CT were collected.Results 1809 MSM attending the clinic between October 2011 and January 2013 took part in the study, 112 (6.2%) of whom had rectal samples which tested positive for CT. 85/112 (75.9%) CT positive rectal samples were assigned 66 different genotypes. Two distinct genotype sub-clusters were identified: Sub-cluster 1 consisted of more HIV-negative men than sub-cluster 2 (p=0.025), and the MLVA-ompA genotypes in these sub-clusters reflected this. Isolates were successfully cultured from 37 of the 112 specimens, from which 27 otherwise unobtainable (from direct PCR) MLVA-ompA genotypes were gained.
ConclusionsThe most prevalent genotypes were G, E and D representing some overlap with the heterosexual distribution in UK. Sub-cluster 1 consisted of more "heterosexual genotypes" and significantly more HIV-negative men than sub-cluster 2, associated with "MSM genotypes". There was a higher diversity of CT strains among MSM in Brighton than observed in other cities.