Background: Arterial oxygenation is often impaired during one-lung ventilation (OLV), due to both pulmonary shunt and atelectasis. Lower fraction of inspiration O 2 (FiO 2 ) may reduce inflammation and complications, but may increase the risk of hypoxemia. The aim of this randomized controlled parallel trial was to analyze whether higher positive end-expiratory pressure (PEEP) could improve oxygenation and maintain lower levels of inflammation during OLV under a lower FiO 2 .Methods: One hundred and twenty patients with selective thoracotomy for esophageal cancer (EC) were classified randomly into four groups on a ratio of 1:1:1:1 using a computer-generated list, including Group A (FiO 2 =0.6, PEEP =0), Group B (FiO 2 =0.6, PEEP =5 cmH 2 O), Group C (FiO 2 =1.0, PEEP =8 cmH 2 O), and Group D (FiO 2 =1.0, PEEP =10 cmH 2 O). The oxygenation and pulmonary shunt were primary outcomes.Haemodynamics, respiratory mechanics, serum IL-6 and IL-10 levels, and complications were taken as secondary outcomes. Follow-up was terminated until discharge.Results: Two patients in Group A and two in Group D were excluded due to hypoxemia and hypotension, respectively. Then the data of 116 patients (Group A =28, Group B =30 Group C =30, and Group D =28) were assessed for final analysis. Compared with Group B, the partial pressure of oxygen (PaO 2 ) and dynamic compliance during OLV in Group D were significantly increased from 15 minutes to 60 minutes, while pulmonary shunt was significantly decreased (P>0.05). Patients in Group D had higher levels of central venous pressure (CVP) and airway pressure (Paw) during OLV and higher levels of IL-6 and IL-10 after OLV compared with Group B (P>0.05). No statistical differences were found in oxygen saturation (SaO 2 ), PvO 2 (partial pressure of oxygen in venous blood), partial pressure of end-tidal carbon dioxide (ETCO 2 ), partial pressure of carbon dioxide in artery (PaCO 2 ), heart rate (HR), mean arterial pressure (MAP), and complications among the four groups (P>0.05).Conclusions: Higher PEEP increased the oxygenation under 60% O 2 during OLV. However, the haemodynamics and respiratory mechanics changed, and the levels of inflammation increased. A higher PEEP under 60% O2 during OLV is not recommended.