The chemical decontamination of infected dental implants is essential for the successful treatment of peri-implantitis. The aim of this study was to assess the antibacterial effect of a hydrogen peroxide-titanium dioxide (HO-TiO) suspension against Staphylococcus epidermidis biofilms. Titanium (Ti) coins were inoculated with a bioluminescent S. epidermidis strain for 8 h and subsequently exposed to HO with and without TiO nanoparticles or chlorhexidine (CHX). Bacterial regrowth, bacterial load and viability after decontamination were analyzed by continuous luminescence monitoring, live/dead staining and scanning electron microscopy. Bacterial regrowth was delayed on surfaces treated with HO-TiO compared to HO. HO-based treatments resulted in a lower bacterial load compared to CHX. Few viable bacteria were found on surfaces treated with HO and HO-TiO, which contrasted with a uniform layer of dead bacteria for surfaces treated with CHX. HO-TiO suspensions could therefore be considered an alternative approach in the decontamination of dental implants.