“…We have developed gnotobiotic husbandry methods for the zebrafish, and used them to reveal host responses to the gut microbiota including effects on innate immunity, nutrient metabolism, and intestinal epithelial differentiation and renewal (Rawls et al, 2004(Rawls et al, , 2006Bates et al, 2006Bates et al, , 2007Cheesman and Guillemin, 2007;Cheesman et al, 2011;Kanther and Rawls, 2010). Preliminary insights into the membership of the zebrafish gut microbiota have been provided by sequencing libraries of bacterial 16S rRNA genes amplified from pooled intestinal samples from zebrafish reared in laboratory aquaculture facilities (Rawls et al, 2004(Rawls et al, , 2006Bates et al, 2006;Brugman et al, 2009). These results indicate that the zebrafish gut microbiota is numerically dominated at all stages of the zebrafish life cycle by members of the bacterial phylum Proteobacteria, with the phyla Firmicutes and Fusobacteria also prevalent during larval and adult stages respectively.…”