AimsTo find clinical and immunological signatures of the SARS‐CoV‐2 and the COVID‐19 pandemic on children newly diagnosed with type 1 diabetes (T1D).MethodsA single‐center, retrospective, observational study comparing the clinical and immunological characteristics of children diagnosed with T1D the year before and during the first two years of the COVID‐19 pandemic. Data extracted from the medical records included clinical and demographic parameters, COVID‐19 PCR results, and the presence of anti‐islet, thyroid, and celiac‐related antibodies. Also obtained from the medical records was a family history of T1D, celiac disease, and autoimmune thyroid disease in a first‐degree family member.Results376 children were diagnosed with T1D during the study period. 132 in the pre‐COVID era and 246 in the first two years of the pandemic. At diagnosis, the pH in children with DKA was lower, and HbA1c tended to be higher in the COVID‐19 group compared to the pre‐COVID‐19 group [7.30 (7.18, 7.35) vs. 7.33 (7.19, 7.36), P=0.046] and [110.9 (86.9,129.5) vs. 100(80.3,129.5), P=0.067)] respectively. Multiple islet antibodies (IA) were significantly more common among patients in the pre‐COVID‐19 group compared to the COVID‐19 group (72% vs.61%, p=0.032). Tissue Transglutaminase antibodies were more common among children diagnosed in the COVID‐19 compared to the pre‐COVID group (16.6% vs.7.9%,p=0.022).ConclusionsOur findings suggest that SARS‐CoV‐2 and the environmental alterations caused by the pandemic affected the clinical characteristics and the immunological profile of children diagnosed with T1D. It is, therefore, plausible that the virus plays a role in the autoimmune process causing T1D.