Overexpression of Glutathione S-Transferase Genes in Field λ-Cyhalothrin-Resistant Population of Cydia pomonella: Reference Gene Selection and Expression Analysis
Abstract:Analysis of the glutathione S-transferase (GST) gene expression in an insecticide-resistant strain of Cydia pomonella using real-time quantitative polymerase chain reaction is a key step toward more mechanism studies that require suitable reference genes with stable expression. Here, nine commonly used reference genes were selected, and their expression stabilities were analyzed. Results showed that EF-1α was the most stable reference gene in all of the experimental sets. The combinations of EF-1α and 18S, EF-… Show more
“…More convincing results were obtained when two genes were used for expression normalization ( Figures 5A,B ). Our results corroborate the current notion of using two or three genes for target gene expression normalization to enhance accuracy (Arya et al, 2017 ; Li et al, 2018c ; Wei et al, 2020 ; Bai et al, 2021 ; Fu and Meyer-Rochow, 2021 ).…”
Section: Discussionsupporting
confidence: 90%
“…It is worth mentioning that the expression change was more extensive at 37°C for Hsp70 when normalized with NADH , the least stable gene. Recently, elimination of such erroneous findings was achieved by normalization of gene expression with combinations of stable reference genes in different experimental conditions in Helicoverpa armigera (Zhang et al, 2015 ), Aphis gossypii (Ma et al, 2016 ), and Cydia pomonella (Wei et al, 2020 ). Additionally, with the selected single reference genes, such as β -Tubulin (most stable) and RPL17 (least stable), we performed RT-qPCR to study Kr-h1 expression patterns in several developmental stages of ISx ( Figure 5C ).…”
Ips sexdentatus (Coleoptera: Curculionidae: Scolytinae) is one of the most destructive and economically important forest pests. A better understanding of molecular mechanisms underlying its adaptation to toxic host compounds may unleash the potential for future management of this pest. Gene expression studies could be considered as one of the key experimental approaches for such purposes. A suitable reference gene selection is fundamental for quantitative gene expression analysis and functional genomics studies in I. sexdentatus. Twelve commonly used reference genes in Coleopterans were screened under different experimental conditions to obtain accurate and reliable normalization of gene expression data. The majority of the 12 reference genes showed a relatively stable expression pattern among developmental stages, tissue-specific, and sex-specific stages; however, some variabilities were observed during varied temperature incubation. Under developmental conditions, the Tubulin beta-1 chain (β-Tubulin) was the most stable reference gene, followed by translation elongation factor (eEF2) and ribosomal protein S3 (RPS3). In sex-specific conditions, RPS3, β-Tubulin, and eEF2 were the most stable reference genes. In contrast, different sets of genes were shown higher stability in terms of expression under tissue-specific conditions, i.e., RPS3 and eEF2 in head tissue, V-ATPase-A and eEF2 in the fat body, V-ATPase-A and eEF2 in the gut. Under varied temperatures, β-Tubulin and V-ATPase-A were most stable, whereas ubiquitin (UbiQ) and V-ATPase-A displayed the highest expression stability after Juvenile Hormone III treatment. The findings were validated further using real-time quantitative reverse transcription PCR (RT-qPCR)-based target gene expression analysis. Nevertheless, the present study delivers a catalog of reference genes under varied experimental conditions for the coleopteran forest pest I. sexdentatus and paves the way for future gene expression and functional genomic studies on this species.
“…More convincing results were obtained when two genes were used for expression normalization ( Figures 5A,B ). Our results corroborate the current notion of using two or three genes for target gene expression normalization to enhance accuracy (Arya et al, 2017 ; Li et al, 2018c ; Wei et al, 2020 ; Bai et al, 2021 ; Fu and Meyer-Rochow, 2021 ).…”
Section: Discussionsupporting
confidence: 90%
“…It is worth mentioning that the expression change was more extensive at 37°C for Hsp70 when normalized with NADH , the least stable gene. Recently, elimination of such erroneous findings was achieved by normalization of gene expression with combinations of stable reference genes in different experimental conditions in Helicoverpa armigera (Zhang et al, 2015 ), Aphis gossypii (Ma et al, 2016 ), and Cydia pomonella (Wei et al, 2020 ). Additionally, with the selected single reference genes, such as β -Tubulin (most stable) and RPL17 (least stable), we performed RT-qPCR to study Kr-h1 expression patterns in several developmental stages of ISx ( Figure 5C ).…”
Ips sexdentatus (Coleoptera: Curculionidae: Scolytinae) is one of the most destructive and economically important forest pests. A better understanding of molecular mechanisms underlying its adaptation to toxic host compounds may unleash the potential for future management of this pest. Gene expression studies could be considered as one of the key experimental approaches for such purposes. A suitable reference gene selection is fundamental for quantitative gene expression analysis and functional genomics studies in I. sexdentatus. Twelve commonly used reference genes in Coleopterans were screened under different experimental conditions to obtain accurate and reliable normalization of gene expression data. The majority of the 12 reference genes showed a relatively stable expression pattern among developmental stages, tissue-specific, and sex-specific stages; however, some variabilities were observed during varied temperature incubation. Under developmental conditions, the Tubulin beta-1 chain (β-Tubulin) was the most stable reference gene, followed by translation elongation factor (eEF2) and ribosomal protein S3 (RPS3). In sex-specific conditions, RPS3, β-Tubulin, and eEF2 were the most stable reference genes. In contrast, different sets of genes were shown higher stability in terms of expression under tissue-specific conditions, i.e., RPS3 and eEF2 in head tissue, V-ATPase-A and eEF2 in the fat body, V-ATPase-A and eEF2 in the gut. Under varied temperatures, β-Tubulin and V-ATPase-A were most stable, whereas ubiquitin (UbiQ) and V-ATPase-A displayed the highest expression stability after Juvenile Hormone III treatment. The findings were validated further using real-time quantitative reverse transcription PCR (RT-qPCR)-based target gene expression analysis. Nevertheless, the present study delivers a catalog of reference genes under varied experimental conditions for the coleopteran forest pest I. sexdentatus and paves the way for future gene expression and functional genomic studies on this species.
“…11 However, the recent development of moderate levels of resistance to λ-cyhalothrin by C. pomonella has been reported in field populations in northeast China. 13 Previous studies have revealed high levels of enzymatic detoxification, mainly due to cytochrome P450, glutathione S-transferases (GST), and esterases (EST), were the primary resistance mechanism in field populations of C. pomonella. 14 GSTs (EC 2.5.1.18) are a diverse family of multifunctional enzymes in the phase II metabolism of xenobiotic substrates that are widely distributed in aerobic organisms.…”
Section: ■ Introductionmentioning
confidence: 99%
“…24 Recombinant CpGSTd1, CpGSTd3, and CpGSTe3 enzymes expressed in Escherichia coli have been shown to indirectly deplete λ-cyhalothrin, 11,15,24 and CpGSTe3 was overexpressed in field-collected λ-cyhalothrin-resistant strains of C. pomonella from northeast China. 13 However, the roles of other GST genes in insecticide metabolisms and resistance remain unclear. increase in nymph mortalities after carbaryl treatment, suggesting that LmGSTs3 may be involved in carbaryl detoxification in Locusta migratoria manilensis (Meyen) (Orthoptera: Acrididae).…”
The codling moth, Cydia pomonella (L.), is a quarantine pest of global significance impacting pome fruits and walnuts. It has evolved resistance to many commonly used insecticides including λ-cyhalothrin. Glutathione S-transferases (GSTs) are multifunctional enzymes playing a crucial role in the detoxification of insecticides in insects. However, the role of specific GST gene in λ-cyhalothrin resistance in C. pomonella is unclear. In this study, we identified three sigma-class genes (CpGSTs1, CpGSTs2, and CpGSTs3). These genes were ubiquitously expressed at all developmental stages, and of these, the expression level of CpGSTs2 in the larval stage was significantly higher than in the egg, pupal, and adult stages. Moreover, CpGSTs2 was predominantly expressed in the fat body while lower levels in the cuticle. In addition to exposure of larvae to LD 10 of λ-cyhalothrin elevating the expression level of CpGSTs2, mRNA levels of CpGSTs2 in a field population (ZW_R) from northeast China, which has developed moderate level resistance to λ-cyhalothrin, was significantly higher than that of susceptible strains. In vitro inhibition assays demonstrated that λcyhalothrin inhibited the conjugating activities of recombinant CpGSTs2, and metabolic assays indicated that λ-cyhalothrin could be depleted by recombinant CpGSTs2. These results bring evidence for the involvement of CpGSTs2 in C. pomonella in resistance to λcyhalothrin.
“…The EF1α, encoding a protein associated with translation elongation, is the most abundant protein in the cell and highly conserved in different species (Yin et al, 2020). Several research works have been reported that EF1α is the most stable reference gene in different group of insect species such as Lymantria dispar (Lepidoptera: Lymantriidae) (Yin et al, 2020), Cydia pommnella (Lepidoptera: Tortricidae) (Wei et al, 2020), Aphis gossypii (Hemiptera: Aphididae) (Ma et al, 2016), Locusta migratoria manilensis (Orthoptera: Acrididae) (Yang et al, 2014), and H. convergens (Pan et al, 2015). The ICG website 2 counts the top 10 reported internal reference genes, among which, EF1α is in the first rank (Sang et al, 2017).…”
Reverse transcriptase-quantitative polymerase chain reaction (RT-qPCR) is an accurate and convenient technique for quantifying expression levels of the target genes. Selection of the appropriate reference gene is of the vital importance for RT-qPCR analysis. Hippodamia variegata is one of the most important predatory natural enemies of aphids. Recently, transcriptome and genome sequencings of H. variegata facilitate the gene functional studies. However, there has been rare investigation on the detection of stably expressed reference genes in H. variegata. In the current study, by using five analytical tools (Delta Ct, geNorm, NormFinder, BestKeeper, and RefFinder), eight candidate reference genes, namely, Actin, EF1α, RPL7, RPL18, RPS23, Tubulin-α, Tubulin-β, and TufA, were evaluated under four experimental conditions including developmental stages, tissues, temperatures, and diets. As a result, a specific set of reference genes were recommended for each experimental condition. These findings will help to improve the accuracy and reliability of RT-qPCR data, and lay a foundation for further exploration on the gene function of H. variegata.
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