“…For validation of the mRNA data, samples were prepared as previously reported [18] using assays detecting ASCL1 (Hs00269932_m1), BCL2 (Hs00608023_m1), EGFR (Hs01076076_m1), ERBB2 (Hs01001580_m1), DOCK11 (Hs00376176_m1), GPNMB (Hs01095679_m1), IFI27 (Hs00271467_m1), IFIT2 (fwd primer: 5'- CCCAGCATCAGCCACACT-‘3, rev primer: 5’- AAAAACCATGAATTTGTATTGTTTTAATTGCACAA-‘3, reporter: 5’- CTGGGTTGGAAAATGT-‘3), IFITM1 (fwd primer: 5’- GGCTCTGTGACAGTCTACCATATT-‘3, rev primer: 5’- GCTATGGGCGGCTACTAGTAAC-‘3, reporter: 5’- CCCGTTTTTCCTGTATTATC-‘3), IGF1R (Hs00609566_m1), MX1 (fwd primer: 5’- TGCTGAACATCACAGCTTATTTCCT-‘3, rev primer: 5’- CGGCACTCATGCTCCTAAAACA-‘3, reporter: 5’- CTGGGTTTGTGAAGGGACAT-‘3), NFKBIA (Hs00153283_m1), PGR (Hs01556702_m1), RET (Hs01120030_m1), SERPINE1 (Hs00167155_m1), and STAT3 (Hs00234174_m1). For validation of the miRNA results, samples were prepared using the TaqMan MicroRNA RT kit (Applied Biosystems Life Technologies) as described by the manufacturer with assays detecting let-7d (#002283), miR-103 (#000439), miR-106b (#000442), miR-126 (#002228), miR-135a (#000460), miR-135b (#002261), miR-21 (#000397), miR-29c (#000587), miR-205 (#000509), miR-222 (#002276), miR-342-3p (#002260), miR-365 (#001020), and miR-652 (#002352).…”