“…We crossed several studies from the recent literature based on microarray transcriptome analyses and ChIP-chip, ChIP-DSL or ChIP-paired end di-tag data obtained from mammary tumor cell lines (Lin et al, 2004(Lin et al, , 2007Laganiere et al, 2005;Kininis et al, 2007;Kwon et al, 2007) to select a group of relevant genes based on the following criteria: hormone-stimulated gene expression in ERa-positive mammary tumor cell lines, complete lack of expression in ERa-negative breast cancer cell lines (Nagaraja et al, 2006) and ERa target identified by ChIP. Thus, we investigated gene regulation of Annexin A9 (ANXA9), a gene coding for a protein of the annexin superfamily (Raynal and Pollard, 1994;Gerke and Moss, 2002), the RET proto-oncogene, which encodes a protein receptor tyrosine kinase with a zinc finger domain associated with dominantly inherited cancer syndromes (Goodfellow and Wells, 1995), the tumor protein D52-like 1 (TPD52L1 (D53)) upregulated in human breast and prostate cancers (Balleine et al, 2000;Ahram et al, 2002;Pollack et al, 2002;Rubin et al, 2004), bone morphogenetic protein-6 (BMP6), a multifunctional molecule of the transforming growth factor-b superfamily overexpressed in breast, prostate and salivary gland cancers (Hamdy et al, 1997;Heikinheimo et al, 1999) and the gene regulated in breast cancer 1 (GREB1), whose product contributes to the growthpromoting effects of estrogens in MCF-7 cells (Rae et al, 2005). We confirmed that expression of these genes was stimulated by estradiol in MCF7 cells (Figure 7a) and assessed changes in relative expression levels in the MDA-66 cells in the absence and in the presence of AZA.…”