Abstract:Markovian models provide a convenient way for estimating kinetic properties of biomolecular systems from molecular dynamics (MD) trajectories. These formalisms present attractive characteristics which potentially can overcome sampling problems by constructing long-term kinetic and thermodynamic information from short trajectories. Markov State Models (MSM) traditionally use the time-dependent transition probability matrix (TPM) to estimate different properties of the system as opposed to the time-independent t… Show more
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