The spindle checkpoint generates a ''wait anaphase'' signal at unattached kinetochores to prevent premature anaphase onset. Kinetochore-localized dynein is thought to silence the checkpoint by transporting checkpoint proteins from microtubule-attached kinetochores to spindle poles. Throughout metazoans, dynein recruitment to kinetochores requires the protein Spindly. Here, we identify a conserved motif in Spindly that is essential for kinetochore targeting of dynein. Spindly motif mutants, expressed following depletion of endogenous Spindly, target normally to kinetochores but prevent dynein recruitment. Spindly depletion and Spindly motif mutants, despite their similar effects on kinetochore dynein, have opposite consequences on chromosome alignment and checkpoint silencing. Spindly depletion delays chromosome alignment, but Spindly motif mutants ameliorate this defect, indicating that Spindly has a dynein recruitment-independent role in alignment. In Spindly depletions, the checkpoint is silenced following delayed alignment by a kinetochore dynein-independent mechanism. In contrast, Spindly motif mutants are retained on microtubule-attached kinetochores along with checkpoint proteins, resulting in persistent checkpoint signaling. Thus, dynein-mediated removal of Spindly from microtubuleattached kinetochores, rather than poleward transport per se, is the critical reaction in checkpoint silencing. In the absence of Spindly, a second mechanism silences the checkpoint; this mechanism is likely evolutionarily ancient, as fungi and higher plants lack kinetochore dynein. Microtubule attachments of the correct geometry are stabilized by tension experienced at sister kinetochores that have made bioriented connections to opposite poles (Nicklas 1997). Once all kinetochores are attached in a bioriented fashion to microtubule bundles, termed kinetochore fibers, the checkpoint signal is silenced and the cell proceeds to anaphase.The spindle checkpoint regulates the E3 ubiquitin ligase anaphase-promoting complex/cyclosome (APC/C), which targets cyclin B and securin for destruction by the 26S proteasome. Specifically, the checkpoint components Mad2, BubR1, and Bub3 interact with and inhibit the essential APC/C cofactor Cdc20 by forming diffusible mitotic checkpoint complexes (Hwang et al. 1998;Sudakin et al. 2001;Nilsson et al. 2008). Additional components of the checkpoint pathway, including Mad1 and the kinases Bub1 and Mps1, are involved in the generation and amplification of the checkpoint signal (Hoyt et al. 1991;Li and Murray 1991;Abrieu et al. 2001).The conserved KNL-1/Mis12 complex/Ndc80 complex (KMN) network constitutes the core attachment site for microtubules at the kinetochore and also recruits components that generate the checkpoint signal (Burke and Stukenberg 2008). Additional contacts to microtubules are made by the kinesin CENP-E (Weaver et al. 2003) and by the minus end-directed motor dynein and its Cold Spring Harbor Laboratory Press on May 11, 2018 -Published by genesdev.cshlp.org Downloaded from