Haloxylon ammodendron and Haloxylon persicum are important
drought-tolerant plants in northwest China. The whole-genome sequencing
of H. ammodendron and H. persicum grown in their natural
environment is incomplete, and their transcriptional regulatory network
in response to drought environment remains unclear. To reveal the
transcriptional responses of H. ammodendron and H.
persicum to an arid environment, we performed single-molecule real-time
(SMRT) and Illumina RNA sequencing. In total, 20,246,576 and 908,053
subreads and 435,938 and 210,334 circular consensus sequencing reads
were identified by SMRT sequencing of H. ammodendron and H.
persicum, and 15238 and 10135 unigenes, respectively, were successfully
collected. In addition, 9794 and 7330 simple sequence repeats (SSRs) and
838 and 71 long noncoding RNAs were identified. In an arid environment,
the growth of H. ammodendron was restricted; plant height
decreased significantly; and the base and branch diameters became
thinner. Hydrogen peroxide (H O )
content and peroxidase activity were increased. Under dry and wet
conditions, 11,803 and 15,217 differentially expressed genes (DEGs) were
identified in H. ammodendron and H. persicum,
respectively. There were 319 and 415 DEGs in the signal transduction
pathways related to drought stress signal perception and transmission,
including the Ca signal pathway, the ABA signal
pathway, and the MAPK signal cascade. In addition, 217 transcription
factors (TFs) and 398 TFs of H. ammodendron and H.
persicum were differentially expressed, including FAR1, MYB, and
AP2/ERF. Bioinformatic analysis showed that under drought stress, the
expression patterns of genes related to active oxygen (reactive oxygen
species) scavenging, functional proteins, lignin biosynthesis, and
glucose metabolism pathways were altered. This is the first full-length
transcriptome report concerning the responses of H. ammodendron
and H. persicum to drought stress. The results provide a
foundation for further study of the adaptation to drought stress. The
full-length transcriptome can be used in genetic engineering research.