We study a stochastic velocity tracking problem for the 2D-Navier–Stokes equations perturbed by a multiplicative Gaussian noise. From a physical point of view, the control acts through a boundary injection/suction device with uncertainty, modeled by stochastic non-homogeneous Navier-slip boundary conditions. We show the existence and uniqueness of the solution to the state equation, and prove the existence of an optimal solution to the control problem.