September 6, 2006; doi:10.1152/ajpcell.00253.2006.-The pre-Bötzinger complex (PBC) in the rostral ventrolateral medulla contains a kernel involved in respiratory rhythm generation. So far, its respiratory activity has been analyzed predominantly by electrophysiological approaches. Recent advances in fluorescence imaging now allow for the visualization of neuronal population activity in rhythmogenic networks. In the respiratory network, voltage-sensitive dyes have been used mainly, so far, but their low sensitivity prevents an analysis of activity patterns of single neurons during rhythmogenesis. We now have succeeded in using more sensitive Ca 2ϩ imaging to study respiratory neurons in rhythmically active brain stem slices of neonatal rats. For the visualization of neuronal activity, fluo-3 was suited best in terms of neuronal specificity, minimized background fluorescence, and response magnitude. The tissue penetration of fluo-3 was improved by hyperosmolar treatment (100 mM mannitol) during dye loading. Rhythmic population activity was imaged with single-cell resolution using a sensitive charge-coupled device camera and a ϫ20 objective, and it was correlated with extracellularly recorded mass activity of the contralateral PBC. Correlated optical neuronal activity was obvious online in 29% of slices. Rhythmic neurons located deeper became detectable during offline image processing. Based on their activity patterns, 74% of rhythmic neurons were classified as inspiratory and 26% as expiratory neurons. Our approach is well suited to visualize and correlate the activity of several single cells with respiratory network activity. We demonstrate that neuronal synchronization and possibly even network configurations can be analyzed in a noninvasive approach with single-cell resolution and at frame rates currently not reached by most scanning-based imaging techniques. neuronal network; fluorescence imaging; optical fingerprint; respiratory rhythm generation; glia A RHYTHMOGENIC NEURONAL NETWORK with intrinsic voltagedependent bursting properties is located in the pre-Bötzinger complex (PBC) of the rostral ventrolateral medulla (1,16,17,30,35). The respiratory rhythms of the in vitro PBC were previously studied in transverse slice preparations of 250-to 700-m thickness (30,32,35), tilted-sagittal slice preparations (28), as well as in en bloc preparations (22, 37). The location of the primary respiratory rhythm generator and a potential role for pacemaker neurons in the generation of breathing rhythms remain controversial though (13). A recent study provides evidence that pacemaker activity is exclusively associated with gasping patterns in situ (27). The current hypotheses regarding respiratory rhythm generation are largely based on electrophysiological studies, which yield excellent temporal resolution of single-cell activities, but analysis of population activity is difficult.With the recent advances in imaging techniques, the PBC, as well as other respiratory centers, have been studied optically using voltage-sensi...