2016
DOI: 10.1038/ncomms10532
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Open access resources for genome-wide association mapping in rice

Abstract: Increasing food production is essential to meet the demands of a growing human population, with its rising income levels and nutritional expectations. To address the demand, plant breeders seek new sources of genetic variation to enhance the productivity, sustainability and resilience of crop varieties. Here we launch a high-resolution, open-access research platform to facilitate genome-wide association mapping in rice, a staple food crop. The platform provides an immortal collection of diverse germplasm, a hi… Show more

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Cited by 388 publications
(586 citation statements)
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“…Although not functionally validated, these two nonsynonymous SNP mutations are believed to change the polarity and therefore enzymatic activity of GBSSI. All these previously observed SNPs and insertion mutations, including other previously published GBSSI alleles summarized in Supplemental Table S3, were not represented in the high density rice array (McCouch et al, 2016) and therefore were not detected in this study. Instead, a highly significant SNP was identified in the promoter region of GBSSI located at the 2769 bp of the start codon (Table II and Supplemental Fig.…”
Section: Discussion Starch Structure Implication To Tweak Cooking Quamentioning
confidence: 88%
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“…Although not functionally validated, these two nonsynonymous SNP mutations are believed to change the polarity and therefore enzymatic activity of GBSSI. All these previously observed SNPs and insertion mutations, including other previously published GBSSI alleles summarized in Supplemental Table S3, were not represented in the high density rice array (McCouch et al, 2016) and therefore were not detected in this study. Instead, a highly significant SNP was identified in the promoter region of GBSSI located at the 2769 bp of the start codon (Table II and Supplemental Fig.…”
Section: Discussion Starch Structure Implication To Tweak Cooking Quamentioning
confidence: 88%
“…Most of the accessions were composed of indica (n = 229), while the rest were admixed-indica (n = 7), tropical japonica (n = 6), and admixture (n = 2; McCouch et al, 2016). GWAS on AAC revealed a prominent peak on chromosome 6 ( Fig.…”
Section: Genomewide Association Study Highlights Genomic Loci That Asmentioning
confidence: 99%
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