Subsequent to the two rounds of whole-genome duplication that occurred in the common
ancestor of vertebrates, a third genome duplication occurred in the stem lineage of
teleost fishes. This teleost-specific genome duplication (TGD) is thought to have provided
genetic raw materials for the physiological, morphological, and behavioral diversification
of this highly speciose group. The extreme physiological versatility of teleost fish is
manifest in their diversity of blood–gas transport traits, which reflects the myriad
solutions that have evolved to maintain tissue O2 delivery in the face of
changing metabolic demands and environmental O2 availability during different
ontogenetic stages. During the course of development, regulatory changes in
blood–O2 transport are mediated by the expression of multiple,
functionally distinct hemoglobin (Hb) isoforms that meet the particular
O2-transport challenges encountered by the developing embryo or fetus (in
viviparous or oviparous species) and in free-swimming larvae and adults. The main
objective of the present study was to assess the relative contributions of whole-genome
duplication, large-scale segmental duplication, and small-scale gene duplication in
producing the extraordinary functional diversity of teleost Hbs. To accomplish this, we
integrated phylogenetic reconstructions with analyses of conserved synteny to characterize
the genomic organization and evolutionary history of the globin gene clusters of teleosts.
These results were then integrated with available experimental data on functional
properties and developmental patterns of stage-specific gene expression. Our results
indicate that multiple α- and β-globin genes
were present in the common ancestor of gars (order Lepisoteiformes) and teleosts. The
comparative genomic analysis revealed that teleosts possess a dual set of TGD-derived
globin gene clusters, each of which has undergone lineage-specific changes in gene content
via repeated duplication and deletion events. Phylogenetic reconstructions revealed that
paralogous genes convergently evolved similar functional properties in different teleost
lineages. Consistent with other recent studies of globin gene family evolution in
vertebrates, our results revealed evidence for repeated evolutionary transitions in the
developmental regulation of Hb synthesis.