Background: Recently, drought stress has brought tremendous loss on the production of agriculture and animal husbandry. In realistic production, plants are often in cyclic wet-dry environment. Therefore, the factors that affect the final yield of plants in adversity including the resistance and tolerance to drought and the ability of plants to resume from the previous damage after rehydration. So it’s necessary for us to study the response and adaptive strategies of plants to drought and rehydration. Generally, the yield of herbage with strong resistance is relatively low. However, Medicago ruthenica(L.)cv.Zhilixing has the advantages of strong resistance and high yield concurrently. This made it can be used for raising livestock, natural grassland improvement, as a good parent for breeding and a new and high quality resource of stress resistance genes. Now, there are still many problems need to be solved when compared with other important legume forages. Therefore, we analyzed the changes of Medicago ruthenica(L.)cv.Zhilixing on transcription level under drought stress and rehydration, explored its phased response strategies.Results: We obtained 191 DEGs in drought stress, and the three treatments has 43 DEGs in common. Galactose metabolism, Starch and sucrose metabolism, Arginine and proline metabolism, TCA cycle, Photosynthesis-antenna proteins, were involved in the adaptation of Medicago ruthenica to 9 days of drought stress. The regulation of Arginine and proline metabolism, Cysteine and methionine metabolism, Photosynthesis-antenna proteins, Ascorbate and aldarate metabolism were conducive to the resistance of Medicago ruthenica to severe drought stress. The regulation of Starch and sucrose metabolism, Flavonoid biosynthesis, Valine, leucine and isoleucine degradation, Circadian rhythm-plant was beneficial to the post drought recovery of Medicago ruthenica.Conclusions: We preliminarily analyzed the adaptation mechanism of the plant under different drought and rehydration conditions. Medicago ruthenica(L.)cv.Zhilixing adopts different strategies to adapt to different degrees of drought stress and rehydration. The research discovered the genes that can be used as candidate genes to improve stress resistance and drought adaptability of plants. Our transcriptome data dramatically enriches the resources of stress resistance genes. It can provide theoretical support for further adaptation mechanism research of the plant under different drought and rehydration conditions.