One stop shop IV: taxonomic update with molecular phylogeny for important phytopathogenic genera: 76–100 (2020)

Jayawardena, Ruvishika S.; Hyde, Kevin D.; Chen, Yi Jyun; Papp, Viktor; Palla, Balázs; Papp, Dávid; Bhunjun, Chitrabhanu S.; Hurdeal, Vedprakash G.; Senwanna, Chanokned; Manawasinghe, Ishara S.; Harischandra, Dulanjalee L.; Gautam, Ajay Kumar; Avasthi, Shubhi; Chuankid, Boontiya; Goonasekara, Ishani D.; Hongsanan, Sinang; Zeng, Xiang‐Yu; Liyanage, K. K.; Liu, Ning-Guo; Karunarathna, Anuruddha; Hapuarachchi, Kalani Kanchana; Luangharn, Thatsanee; Raspé, Olivier; Brahmanage, Rashika S.; Doilom, Mingkwan; Lee, Hyang Burm; Liu, Mei; Jeewon, Rajesh; Huanraluek, Naruemon; Chaiwan, Napalai; Stadler, Marc; Wang, Yong

doi:10.1007/s13225-020-00460-8

Cited by 68 publications

(58 citation statements)

References 580 publications

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“…The use of highly conserved markers (ITS, IGS, tef1 , etc. ), either individually or in combination, does not always provide the required resolution for safely identifying new species and establishing reliable clustering of all possible interspecies clades [ 70 , 71 , 72 ]. Here we propose a new, genome level approach for creating a phylogenetic tree by using the power of comparative genomics, based on the full spectrum of orthologues from available genomes of interest [ 73 ] (Champramary et al ms in prep) ( Figure 2 ).…”

Section: Identificationmentioning

confidence: 99%

Epidemiology, Biotic Interactions and Biological Control of Armillarioids in the Northern Hemisphere

et al. 2021

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Armillarioids, including the genera Armillaria, Desarmillaria and Guyanagaster, represent white-rot specific fungal saprotrophs with soilborne pathogenic potentials on woody hosts. They propagate in the soil by root-like rhizomorphs, connecting between susceptible root sections of their hosts, and often forming extended colonies in native forests. Pathogenic abilities of Armillaria and Desarmillaria genets can readily manifest in compromised hosts, or hosts with full vigour can be invaded by virulent mycelia when exposed to a larger number of newly formed genets. Armillaria root rot-related symptoms are indicators of ecological imbalances in native forests and plantations at the rhizosphere levels, often related to abiotic environmental threats, and most likely unfavourable changes in the microbiome compositions in the interactive zone of the roots. The less-studied biotic impacts that contribute to armillarioid host infection include fungi and insects, as well as forest conditions. On the other hand, negative biotic impactors, like bacterial communities, antagonistic fungi, nematodes and plant-derived substances may find applications in the environment-friendly, biological control of armillarioid root diseases, which can be used instead of, or in combination with the classical, but frequently problematic silvicultural and chemical control measures.

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Section: Identificationmentioning

confidence: 99%

Epidemiology, Biotic Interactions and Biological Control of Armillarioids in the Northern Hemisphere

et al. 2021

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“…They provided a series of "backbone" trees of fungal genera, family, order or even higher taxonomic level based on DNA sequences from extype, epitype and authoritative strains. From 2014 to 2020, "One stop shop: backbones trees for important phytopathogenic genera: I-IV", were published in Fungal Diversity and led by [155] and [156][157][158] with international co-operations, which provided phylogenetic frameworks of 100 groups or genera of plant pathogenic fungi in the Ascomycota, Basidiomycota, Mucormycotina (Fungi), and Oomycota. Almost at the same time, in Studies in Mycology, a series of "Genera of phytopathogenic fungi: GOPHY1-3", which introduced stable platforms for the taxonomy of 62 phytopathogenic genera, including 5 new genera, 88 new species, 38 new combinations, four new names and 13 typifications of older names [159][160][161].…”

Section: More or Fewer Species That We Need In Agricultural Practicementioning

confidence: 99%

Diagnosis of Fungal Plant Pathogens Using Conventional and Molecular Approaches

Dayarathne¹,

Mridha²,

Wang³

2021

Diagnostics of Plant Diseases

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Fungi are a large group of eukaryotes found as saprophytes, pathogens or endophytes, which distribute in every corner of our planet. As the main pathogens, fungi can cause 70–80% of total plant diseases, leading to huge crop yield reduction and economic loss. For identification of fungal plant pathogens, mycologists and plant pathologists have mainly gone through two stages, viz. morphological observation and morphology/phylogeny, and the next era might be utilizing DNA barcodes as the tool for rapid identification. This chapter accounts i) the brief history of development for fungal identification tools and main concepts, ii) the importance and confusion of “One fungus, one name” for pathogen identification, iii) more or fewer species that we need in agricultural practice, and iv) the foreground of fungal plant pathogen identification. These will help to solve the practical problems of identification of fungal pathogens in agricultural production.

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“…Cladosporium represents one of the considerable genera of Ascomycota, Pezizomycotina, Dothideomycetes, Pleosporomycetidae, Capnodiales, Cladosporiaceae 6 . It comprises species that are among the most prevalent molds isolated from different environments in the world 7 .…”

Section: Introductionmentioning

confidence: 99%

Morphological, molecular characterization, plant pathogenicity and biocontrol of Cladosporium complex groups associated with faba beans

El‐Dawy

Gherbawy

Hussein

2021

Sci Rep

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Vicia faba (faba bean) is one of the most significant leguminous crops. The faba bean is specialized by maximum nutritional value, in energy and protein content, which leads it to be suitable for food and feed production. Diseases caused with fungi are amongst the biotic factors responsible for decreasing in faba bean yields. In this work, Cladosporium isolates were recorded in cultivated faba bean leaves and pods collected from markets in Qena, Upper Egypt; morphological features and molecular characterization based on actin gene were performed. The ability of the pathogens to cause disease in faba bean seedlings and the biocontrol method to avoid the pathogenic effect of Cladosporium were determined. Results showed that Cladosporium is the main genera isolated from faba beans, and the morphological criteria showed presence of three species complex groups of Cladosporium (C. cladosporioides, C. herbarum and C. sphaerospermum) and the confirmation with molecular characterization revealed the existence of four species in the three groups. All the 26 tested strains of Cladosporium were able to cause leaf lesions on Vicia faba seedlings with different levels. Chaetomium globosum is a biocontrol agent could inhibit the growth of the majority strains of Cladosporium.

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One stop shop IV: taxonomic update with molecular phylogeny for important phytopathogenic genera: 76–100 (2020)

Cited by 68 publications

References 580 publications

Epidemiology, Biotic Interactions and Biological Control of Armillarioids in the Northern Hemisphere

Epidemiology, Biotic Interactions and Biological Control of Armillarioids in the Northern Hemisphere

Diagnosis of Fungal Plant Pathogens Using Conventional and Molecular Approaches

Morphological, molecular characterization, plant pathogenicity and biocontrol of Cladosporium complex groups associated with faba beans

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