Relative to other parvalbumin isoforms, the mammalian b-parvalbumin (oncomodulin) displays attenuated divalent ion affinity. High-resolution structural data for the Ca 2+ -bound protein have provided little insight into the physical basis for this behavior, prompting an examination of the unliganded state. This article describes the solution structure and peptide backbone dynamics of Ca 2+ -free rat b-parvalbumin (b-PV). Ca 2+ removal evidently provokes significant structural alterations. Interaction between the D helix and the AB domain in the Ca 2+ -bound protein is greatly diminished in the apo-form, permitting the D helix to straighten. There is also a significant reorganization of the hydrophobic core and a concomitant remodeling of the interface between the AB and CD-EF domains. These modifications perturb the orientation of the C and D helices, and the energetic penalty associated with their reversal could contribute to the low-affinity signature of the CD site. By contrast, Ca 2+ removal causes a comparatively minor perturbation of the E and F helices, consistent with the more typical divalent ion affinity observed for the EF site. Ca 2+ -free rat b-PV retains structural rigidity on the picosecond-nanosecond timescale. At 20°C, the majority of amide vectors show no evidence for motion on timescales above 20 ps, and the average order parameter for the entire molecule is 0.92.Keywords: calcium-binding protein; EF-hand protein; parvalbumin; oncomodulin; NMR; structure; dynamics Supplemental material: see www.proteinscience.orgThe role of Ca 2+ in eukaryotic signal transduction (Berridge et al. 2003;Berridge 2004Berridge , 2005) is facilitated by myriad Ca 2+ -binding proteins. Many of these exhibit a metal ion-binding site consisting of a central binding loop and flanking helical segments. This motif is commonly known as the ''EF-hand'' because the arrangement of the loop and helices can be mimicked with the fingers of the right hand (Kretsinger 1980;Kawasaki and Kretsinger 1995;Celio et al. 1996).Within the binding loop, the ligands to the bound ion are positioned at the vertices of an octahedron and, accordingly, are referenced by the axes of a Cartesian Reprint requests to: Michael T. Henzl, Department of Biochemistry, 117 Schweitzer Hall, University of Missouri-Columbia, Columbia, MO 65211, USA; e-mail: henzlm@missouri.edu; fax: (573) 884-4812.Abbreviations: ADR, ambiguous distance restraint; CD site, parvalbumin metal ion-binding site flanked by the C and D helices; CSI, chemical shift index; D a , axial component of the molecular alignment tensor; D k , principal axis component of the molecular diffusion tensor; D t , minor axis component of the molecular diffusion tensor in an axially symmetric system; DSS, sodium 2,2-dimethyl-2-silapentane-5-sulfonate; EDTA, ethylenediaminetetraacetic acid; EF site, parvalbumin metal ion-binding site flanked by the E and F helices; HEPES, 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid; HSQC, heteronuclear single-quantum coherence; Mes, 2-(N-morpholino)et...