We examined DNA double-strand-break-induced mutations in the endogenous adenine phosphoribosyltransferase (APRT) gene in cultured Chinese hamster ovary cells after exposure to restriction endonucleases. PvuII, EcoRV, and StuI, all of which produce blunt-end DNA double-strand breaks, were electroporated into CHO-AT3-2 cells hemizygous at the APRT locus. Colonies of viable cells containing mutations at APRT were expanded, and the mutations that occurred during break repair were analyzed at the DNA sequence level. Restriction enzyme-induced mutations consisted of small deletions of 1 to 36 bp, insertions, and combinations of insertions and deletions at the cleavage sites. Most of the small deletions involved overlaps of one to four complementary bases at the recombination junctions. Southern blot analysis revealed more complex mutations, suggesting translocation, inversion, or insertion of larger chromosomal fragments. These results indicate that blunt-end DNA double-strand breaks can induce illegitimate (nonhomologous) recombination in mammalian chromosomes and that they play an important role in mutagenesis.In the mammalian genome, DNA double-strand breaks can occur during cellular processes (4,46) or as the result of exposure to DNA-damaging agents (51). DNA double-strand breaks can cause chromosomal rearrangements (1), which can lead to cell killing (13), mutagenesis (25), and cell transformation (5). To understand how DNA double-strand breaks lead to genetic rearrangements, it is important to understand the mechanisms of DNA double-strand-break rejoining and how these processes are carried out at the DNA and chromosomal levels.Studies of plasmid integration in a variety of mammalian cell types, along with simian virus 40 (SV40) recircularization studies with monkey cells, have shown that mammalian cells predominantly repair DNA double-strand breaks by endjoining mechanisms that do not require extensive homology between the molecules to be joined (39). Recombination between nonhomologous DNA substrates was first described for bacteria (15) and has been defined as illegitimate recombination (16). Most studies examining illegitimate recombination have used DNA substrates linearized with various restriction endonucleases to produce specific combinations of end structures. These substrates are cleaved in vitro and passed through various cellular and cell-free systems, and the rejoined products are studied. Recircularization studies of a linearized SV40 genome passed through CV 1 monkey cells, and plasmid rejoining studies with Xenopus laevis egg and human cell extracts, have shown that these end-joining processes frequently use overlaps of one to six complementary bases (36,44,48). The products of illegitimate recombination between segments of mammalian chromosomes have been studied by examination of translocation breakpoints and deletion and insertion junctions at various genetic loci (24,25 bination, the initial steps leading to the recombinational event and the mechanisms involved are not understood.To study the...